Detailed information NTG0330540

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: EHC69_RS14080
• Genome accession: NZ_CP034298
• Coordinates: 2846834..2847703 (+)
• Length: 289 a.a.
• NCBI ID: WP_025622886.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain 20160303005-1
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2841834..2852703

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EHC69_RS14060 (EHC69_14220)	nadC	2842215..2843102 (+)	888	WP_114867833.1	carboxylating nicotinate-nucleotide diphosphorylase	-
EHC69_RS14065 (EHC69_14225)	pilA	2843365..2843829 (+)	465	WP_025524817.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	Machinery gene
EHC69_RS14070 (EHC69_14230)	pilB	2843836..2845521 (+)	1686	WP_025789071.1	type IV-A pilus assembly ATPase PilB	Machinery gene
EHC69_RS14075 (EHC69_14235)	pilC	2845546..2846769 (+)	1224	WP_005479682.1	type II secretion system F family protein	Machinery gene
EHC69_RS14080 (EHC69_14240)	pilD	2846834..2847703 (+)	870	WP_025622886.1	A24 family peptidase	Machinery gene
EHC69_RS14085 (EHC69_14245)	coaE	2847704..2848318 (+)	615	WP_025789072.1	dephospho-CoA kinase	-
EHC69_RS14090 (EHC69_14250)	zapD	2848346..2849086 (+)	741	WP_005480890.1	cell division protein ZapD	-
EHC69_RS14095 (EHC69_14255)	yacG	2849155..2849349 (+)	195	WP_005462546.1	DNA gyrase inhibitor YacG	-
EHC69_RS14100 (EHC69_14260)	rplS	2849673..2850026 (-)	354	WP_005462554.1	50S ribosomal protein L19	-
EHC69_RS14105 (EHC69_14265)	trmD	2850068..2850811 (-)	744	WP_005462562.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
EHC69_RS14110 (EHC69_14270)	rimM	2850839..2851387 (-)	549	WP_005462552.1	ribosome maturation factor RimM	-
EHC69_RS14115 (EHC69_14275)	rpsP	2851416..2851664 (-)	249	WP_005379962.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32419.51 Da
• Isoelectric Point: 7.1971

>NTDB_id=330540 EHC69_RS14080 WP_025622886.1 2846834..2847703(+) (pilD) [Vibrio parahaemolyticus strain 20160303005-1]
MEVFQYYPWLFVVFASIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIKPPQELLTLSVPRSSCQNCATPIRIR
DNIPVISWLLLKGKCHHCHTAISPRYPLIELLTAACAGFVAYHFGFSYFTVALIFFTFVLIAATFIDLDTMLLPDQLTLP
LTWAGIALALTEISPVSLQDAVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLVQLRLQKQGIERAFPFGPYLAIAGWVSLIWGDQILSWYFTSILGV

Nucleotide

• Length: 870 bp

>NTDB_id=330540 EHC69_RS14080 WP_025622886.1 2846834..2847703(+) (pilD) [Vibrio parahaemolyticus strain 20160303005-1]
ATGGAAGTGTTCCAGTACTACCCTTGGCTATTCGTGGTGTTTGCCAGTATCTTCGGTTTAATTGTGGGTAGTTTTCTTAA
TGTAGTCATTTATCGGCTACCTAAAATCATGGAATTAGAATGGCGCCGTGAATGCGCCGAATCATTCCCTGAATATAAGA
TTAAGCCACCTCAAGAACTTTTGACATTAAGCGTGCCTCGCTCTTCGTGCCAAAACTGCGCGACGCCAATTCGTATTCGA
GACAATATTCCTGTAATCAGCTGGCTATTGTTAAAAGGAAAATGCCATCATTGTCATACCGCAATTAGTCCTCGCTATCC
GCTGATAGAATTACTCACTGCTGCGTGCGCTGGTTTTGTGGCTTATCATTTCGGCTTTAGCTACTTTACGGTTGCGTTAA
TCTTTTTCACATTTGTCTTAATAGCCGCGACTTTTATCGATCTCGATACTATGCTGCTACCGGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGCGTTAGCATTAACAGAAATAAGCCCTGTTAGTCTACAAGACGCCGTAATTGGTGCGATTGC
CGGTTATTTGTGTCTTTGGTCAGTATATTGGGGTTTCAAACTGCTTACTGGTAAAGAAGGCATGGGTTATGGTGATTTTA
AATTGCTGGCTGCCCTTGGCGCTTGGCTAGGATGGCAATCATTACCAATGATCATCCTACTTTCTTCCGTCGTCGGTGTG
ATATTCGGACTCGTTCAGTTACGACTACAAAAACAAGGTATAGAGAGAGCTTTCCCTTTCGGCCCATATTTAGCGATTGC
AGGATGGGTAAGCTTAATCTGGGGCGACCAAATTCTAAGTTGGTACTTCACGTCAATTTTAGGGGTGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	89.273	100	0.893
pilD	Vibrio cholerae strain A1552	73.611	99.654	0.734
pilD	Acinetobacter baumannii D1279779	52.612	92.734	0.488
pilD	Acinetobacter nosocomialis M2	52.239	92.734	0.484
pilD	Neisseria gonorrhoeae MS11	47.101	95.502	0.45