Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | EHC64_RS02090 | Genome accession | NZ_CP034289 |
| Coordinates | 409800..410330 (+) | Length | 176 a.a. |
| NCBI ID | WP_005466625.1 | Uniprot ID | Q87LA3 |
| Organism | Vibrio parahaemolyticus strain 20140722001-1 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 410505..459048 | 409800..410330 | flank | 175 |
Gene organization within MGE regions
Location: 409800..459048
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EHC64_RS02090 (EHC64_02155) | ssb | 409800..410330 (+) | 531 | WP_005466625.1 | single-stranded DNA-binding protein | Machinery gene |
| EHC64_RS02095 (EHC64_02160) | - | 410409..411827 (+) | 1419 | WP_236578028.1 | site-specific integrase | - |
| EHC64_RS02100 (EHC64_02165) | - | 411834..413387 (+) | 1554 | WP_159408068.1 | site-specific integrase | - |
| EHC64_RS02105 (EHC64_02170) | - | 413380..415749 (+) | 2370 | WP_159408069.1 | integrase | - |
| EHC64_RS02110 (EHC64_02175) | - | 415755..416174 (+) | 420 | WP_136998455.1 | hypothetical protein | - |
| EHC64_RS02115 (EHC64_02180) | - | 416182..416367 (+) | 186 | WP_159408070.1 | hypothetical protein | - |
| EHC64_RS02120 (EHC64_02185) | - | 416649..417890 (+) | 1242 | WP_159408071.1 | hypothetical protein | - |
| EHC64_RS02125 (EHC64_02190) | - | 418260..419168 (+) | 909 | WP_159408072.1 | hypothetical protein | - |
| EHC64_RS27460 | - | 419217..419729 (+) | 513 | WP_236578029.1 | hypothetical protein | - |
| EHC64_RS02135 (EHC64_02200) | - | 419950..420138 (-) | 189 | WP_159408073.1 | hypothetical protein | - |
| EHC64_RS02145 (EHC64_02210) | - | 420501..421757 (-) | 1257 | WP_025626485.1 | ParB/RepB/Spo0J family partition protein | - |
| EHC64_RS02150 (EHC64_02215) | - | 421906..423093 (+) | 1188 | WP_136998487.1 | hypothetical protein | - |
| EHC64_RS02155 (EHC64_02220) | - | 423316..425556 (+) | 2241 | WP_025638917.1 | ATP-dependent endonuclease | - |
| EHC64_RS02160 (EHC64_02225) | - | 425549..427405 (+) | 1857 | WP_025638919.1 | UvrD-helicase domain-containing protein | - |
| EHC64_RS02165 (EHC64_02230) | csrD | 427891..429900 (+) | 2010 | WP_011106082.1 | RNase E specificity factor CsrD | - |
| EHC64_RS02170 (EHC64_02235) | - | 429912..431357 (+) | 1446 | WP_005481017.1 | MSHA biogenesis protein MshI | - |
| EHC64_RS02175 (EHC64_02240) | gspM | 431354..432004 (+) | 651 | WP_140103015.1 | type II secretion system protein GspM | - |
| EHC64_RS02180 (EHC64_02245) | - | 431997..432326 (+) | 330 | WP_005481006.1 | MSHA biogenesis protein MshK | - |
| EHC64_RS02185 (EHC64_02250) | mshL | 432347..433990 (+) | 1644 | WP_005456314.1 | pilus (MSHA type) biogenesis protein MshL | - |
| EHC64_RS02190 (EHC64_02255) | - | 434034..434879 (+) | 846 | WP_005497278.1 | ExeA family protein | - |
| EHC64_RS02195 (EHC64_02260) | - | 434864..435952 (+) | 1089 | WP_159404026.1 | lipopolysaccharide assembly protein LapB | - |
| EHC64_RS02200 (EHC64_02265) | - | 435949..437673 (+) | 1725 | WP_005456306.1 | GspE/PulE family protein | - |
| EHC64_RS02205 (EHC64_02270) | - | 437682..438905 (+) | 1224 | WP_015297334.1 | type II secretion system F family protein | - |
| EHC64_RS02210 (EHC64_02275) | - | 438909..439370 (+) | 462 | WP_025504363.1 | hypothetical protein | - |
| EHC64_RS02215 (EHC64_02280) | - | 439665..440120 (+) | 456 | WP_025504361.1 | type II secretion system protein | - |
| EHC64_RS02220 (EHC64_02285) | - | 440191..440421 (+) | 231 | WP_005432800.1 | type II secretion system protein | - |
| EHC64_RS02225 (EHC64_02290) | - | 440541..441026 (+) | 486 | WP_025504359.1 | type II secretion system protein | - |
| EHC64_RS02230 (EHC64_02295) | - | 441023..441589 (+) | 567 | WP_005481015.1 | type II secretion system protein | - |
| EHC64_RS02235 (EHC64_02300) | - | 441590..442303 (+) | 714 | WP_029828005.1 | PilW family protein | - |
| EHC64_RS02240 (EHC64_02305) | - | 442293..442727 (+) | 435 | WP_009707649.1 | hypothetical protein | - |
| EHC64_RS02245 (EHC64_02310) | - | 442733..446629 (+) | 3897 | WP_140103012.1 | DUF6701 domain-containing protein | - |
| EHC64_RS02250 (EHC64_02315) | - | 446781..447824 (+) | 1044 | WP_005381144.1 | rod shape-determining protein | - |
| EHC64_RS02255 (EHC64_02320) | mreC | 447962..448858 (+) | 897 | WP_005461822.1 | rod shape-determining protein MreC | - |
| EHC64_RS02260 (EHC64_02325) | mreD | 448848..449336 (+) | 489 | WP_005461823.1 | rod shape-determining protein MreD | - |
| EHC64_RS02265 (EHC64_02330) | - | 449341..449910 (+) | 570 | WP_005461824.1 | nucleoside triphosphate pyrophosphatase | - |
| EHC64_RS02270 (EHC64_02335) | rng | 449929..451398 (+) | 1470 | WP_005461826.1 | ribonuclease G | - |
| EHC64_RS02275 (EHC64_02340) | - | 451410..455288 (+) | 3879 | WP_029797984.1 | YhdP family protein | - |
| EHC64_RS02280 (EHC64_02345) | - | 455323..456144 (+) | 822 | WP_140103009.1 | carbon-nitrogen hydrolase family protein | - |
| EHC64_RS02285 (EHC64_02350) | tldD | 456156..457601 (+) | 1446 | WP_020835343.1 | metalloprotease TldD | - |
| EHC64_RS02290 (EHC64_02355) | - | 457672..459048 (-) | 1377 | WP_029797986.1 | PhoH family protein | - |
Sequence
Protein
Download Length: 176 a.a. Molecular weight: 19563.62 Da Isoelectric Point: 4.9269
>NTDB_id=330440 EHC64_RS02090 WP_005466625.1 409800..410330(+) (ssb) [Vibrio parahaemolyticus strain 20140722001-1]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYV
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRAQGGAPAMGGQQQQQGGWGQPQQPAQQQYNAPQQQQQAPQQPQ
QQYNEPPMDFDDDIPF
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYV
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRAQGGAPAMGGQQQQQGGWGQPQQPAQQQYNAPQQQQQAPQQPQ
QQYNEPPMDFDDDIPF
Nucleotide
Download Length: 531 bp
>NTDB_id=330440 EHC64_RS02090 WP_005466625.1 409800..410330(+) (ssb) [Vibrio parahaemolyticus strain 20140722001-1]
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGTAACGACCCTGAAATTCGTTACATGCCTAATGG
CGGTGCGGTAGCAAACATCACGATTGCTACTTCTGAGTCATGGCGTGACAAAGCGACTGGCGAACAGCGCGAAAAAACAG
AATGGCACCGTGTTGTGTTGTTCGGTAAGTTGGCAGAAGTTGCTGGTGAATACCTGCGTAAAGGTTCACAAGTTTACGTT
GAAGGCCAACTTCAAACTCGTAAATGGCAAGACCAAAGTGGCCAAGATCGCTACTCAACAGAAGTTGTGGTTCAAGGTTT
CAATGGTGTAATGCAAATGCTTGGTGGCCGTGCTCAAGGTGGCGCTCCTGCAATGGGCGGTCAACAACAGCAGCAAGGCG
GTTGGGGTCAACCTCAACAACCGGCTCAGCAGCAATACAATGCACCTCAACAGCAGCAACAGGCTCCGCAGCAACCACAG
CAGCAATACAACGAGCCACCAATGGATTTTGATGACGATATTCCGTTCTGA
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGTAACGACCCTGAAATTCGTTACATGCCTAATGG
CGGTGCGGTAGCAAACATCACGATTGCTACTTCTGAGTCATGGCGTGACAAAGCGACTGGCGAACAGCGCGAAAAAACAG
AATGGCACCGTGTTGTGTTGTTCGGTAAGTTGGCAGAAGTTGCTGGTGAATACCTGCGTAAAGGTTCACAAGTTTACGTT
GAAGGCCAACTTCAAACTCGTAAATGGCAAGACCAAAGTGGCCAAGATCGCTACTCAACAGAAGTTGTGGTTCAAGGTTT
CAATGGTGTAATGCAAATGCTTGGTGGCCGTGCTCAAGGTGGCGCTCCTGCAATGGGCGGTCAACAACAGCAGCAAGGCG
GTTGGGGTCAACCTCAACAACCGGCTCAGCAGCAATACAATGCACCTCAACAGCAGCAACAGGCTCCGCAGCAACCACAG
CAGCAATACAACGAGCCACCAATGGATTTTGATGACGATATTCCGTTCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
81.006 |
100 |
0.824 |
| ssb | Glaesserella parasuis strain SC1401 |
57.143 |
100 |
0.614 |
| ssb | Neisseria meningitidis MC58 |
48.023 |
100 |
0.483 |
| ssb | Neisseria gonorrhoeae MS11 |
48.023 |
100 |
0.483 |