Detailed information
Bioinformatically predicted
Overview
| Name | pilO | Type | Machinery gene |
| Locus tag | EHC70_RS01870 | Genome accession | NZ_CP034285 |
| Coordinates | 364467..365060 (+) | Length | 197 a.a. |
| NCBI ID | WP_005480482.1 | Uniprot ID | Q87L64 |
| Organism | Vibrio parahaemolyticus strain 20140624012-1 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 359467..370060
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EHC70_RS01855 (EHC70_01890) | - | 360183..362753 (-) | 2571 | WP_005480476.1 | penicillin-binding protein 1A | - |
| EHC70_RS01860 (EHC70_01895) | pilM | 362896..363912 (+) | 1017 | WP_017449463.1 | type IV pilus biogenesis protein PilM | Machinery gene |
| EHC70_RS01865 (EHC70_01900) | pilN | 363896..364474 (+) | 579 | WP_005480484.1 | PilN domain-containing protein | Machinery gene |
| EHC70_RS01870 (EHC70_01905) | pilO | 364467..365060 (+) | 594 | WP_005480482.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| EHC70_RS01875 (EHC70_01910) | pilP | 365050..365565 (+) | 516 | WP_159404023.1 | pilus assembly protein PilP | Machinery gene |
| EHC70_RS01880 (EHC70_01915) | pilQ | 365597..367345 (+) | 1749 | WP_005488227.1 | type IV pilus secretin PilQ | Machinery gene |
| EHC70_RS01885 (EHC70_01920) | aroK | 367534..368052 (+) | 519 | WP_005381319.1 | shikimate kinase AroK | - |
| EHC70_RS01890 (EHC70_01925) | aroB | 368084..369184 (+) | 1101 | WP_005480443.1 | 3-dehydroquinate synthase | - |
Sequence
Protein
Download Length: 197 a.a. Molecular weight: 23091.63 Da Isoelectric Point: 4.8225
>NTDB_id=330393 EHC70_RS01870 WP_005480482.1 364467..365060(+) (pilO) [Vibrio parahaemolyticus strain 20140624012-1]
MVNWQDLEMDEIAEWPLLPQLVVICLLVLLIQGFGYWFYLKPEEARLNNLIQEEQTLKVALRIKANKVAALPQLQSQLDE
LTTRYELLLQQLPAQKELATMLASVNELGIDNKLTFTRIDWGEKQSENFLYRLPLNIELTGDFHDIGRFSQAIATLPRII
TFKDVTWQRVSQESETLHFRVRANTYQFKPEEKKDEK
MVNWQDLEMDEIAEWPLLPQLVVICLLVLLIQGFGYWFYLKPEEARLNNLIQEEQTLKVALRIKANKVAALPQLQSQLDE
LTTRYELLLQQLPAQKELATMLASVNELGIDNKLTFTRIDWGEKQSENFLYRLPLNIELTGDFHDIGRFSQAIATLPRII
TFKDVTWQRVSQESETLHFRVRANTYQFKPEEKKDEK
Nucleotide
Download Length: 594 bp
>NTDB_id=330393 EHC70_RS01870 WP_005480482.1 364467..365060(+) (pilO) [Vibrio parahaemolyticus strain 20140624012-1]
ATGGTTAATTGGCAAGATCTAGAAATGGATGAGATTGCTGAATGGCCATTACTGCCTCAGCTTGTAGTGATTTGCCTGCT
TGTTCTTCTTATCCAAGGGTTTGGTTATTGGTTTTACTTAAAGCCAGAAGAGGCTCGCTTGAACAATTTGATTCAAGAGG
AGCAAACATTAAAAGTGGCATTGCGCATAAAAGCCAACAAGGTGGCTGCATTGCCTCAATTGCAATCTCAACTGGACGAG
CTCACTACGCGTTATGAGTTGCTGTTGCAACAACTACCGGCACAAAAAGAGTTGGCCACAATGTTGGCGTCGGTAAACGA
ACTCGGTATCGACAACAAGTTAACGTTTACTCGAATCGATTGGGGAGAAAAGCAATCTGAAAACTTCCTGTATCGATTGC
CACTAAATATCGAGCTAACAGGTGATTTCCACGATATCGGTCGTTTTTCACAGGCCATTGCCACACTGCCACGAATCATC
ACCTTTAAAGATGTGACTTGGCAGCGTGTCAGCCAAGAGAGTGAAACTTTGCACTTCCGAGTGAGAGCAAACACTTATCA
GTTCAAGCCTGAGGAAAAGAAAGATGAGAAATAA
ATGGTTAATTGGCAAGATCTAGAAATGGATGAGATTGCTGAATGGCCATTACTGCCTCAGCTTGTAGTGATTTGCCTGCT
TGTTCTTCTTATCCAAGGGTTTGGTTATTGGTTTTACTTAAAGCCAGAAGAGGCTCGCTTGAACAATTTGATTCAAGAGG
AGCAAACATTAAAAGTGGCATTGCGCATAAAAGCCAACAAGGTGGCTGCATTGCCTCAATTGCAATCTCAACTGGACGAG
CTCACTACGCGTTATGAGTTGCTGTTGCAACAACTACCGGCACAAAAAGAGTTGGCCACAATGTTGGCGTCGGTAAACGA
ACTCGGTATCGACAACAAGTTAACGTTTACTCGAATCGATTGGGGAGAAAAGCAATCTGAAAACTTCCTGTATCGATTGC
CACTAAATATCGAGCTAACAGGTGATTTCCACGATATCGGTCGTTTTTCACAGGCCATTGCCACACTGCCACGAATCATC
ACCTTTAAAGATGTGACTTGGCAGCGTGTCAGCCAAGAGAGTGAAACTTTGCACTTCCGAGTGAGAGCAAACACTTATCA
GTTCAAGCCTGAGGAAAAGAAAGATGAGAAATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilO | Vibrio campbellii strain DS40M4 |
94.211 |
96.447 |
0.909 |
| pilO | Vibrio cholerae strain A1552 |
72.589 |
100 |
0.726 |