Detailed information
Bioinformatically predicted
Overview
| Name | pilN | Type | Machinery gene |
| Locus tag | EHC70_RS01865 | Genome accession | NZ_CP034285 |
| Coordinates | 363896..364474 (+) | Length | 192 a.a. |
| NCBI ID | WP_005480484.1 | Uniprot ID | Q87L63 |
| Organism | Vibrio parahaemolyticus strain 20140624012-1 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 358896..369474
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EHC70_RS01850 (EHC70_01885) | oxyR | 359219..360127 (+) | 909 | WP_159404022.1 | DNA-binding transcriptional regulator OxyR | - |
| EHC70_RS01855 (EHC70_01890) | - | 360183..362753 (-) | 2571 | WP_005480476.1 | penicillin-binding protein 1A | - |
| EHC70_RS01860 (EHC70_01895) | pilM | 362896..363912 (+) | 1017 | WP_017449463.1 | type IV pilus biogenesis protein PilM | Machinery gene |
| EHC70_RS01865 (EHC70_01900) | pilN | 363896..364474 (+) | 579 | WP_005480484.1 | PilN domain-containing protein | Machinery gene |
| EHC70_RS01870 (EHC70_01905) | pilO | 364467..365060 (+) | 594 | WP_005480482.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| EHC70_RS01875 (EHC70_01910) | pilP | 365050..365565 (+) | 516 | WP_159404023.1 | pilus assembly protein PilP | Machinery gene |
| EHC70_RS01880 (EHC70_01915) | pilQ | 365597..367345 (+) | 1749 | WP_005488227.1 | type IV pilus secretin PilQ | Machinery gene |
| EHC70_RS01885 (EHC70_01920) | aroK | 367534..368052 (+) | 519 | WP_005381319.1 | shikimate kinase AroK | - |
| EHC70_RS01890 (EHC70_01925) | aroB | 368084..369184 (+) | 1101 | WP_005480443.1 | 3-dehydroquinate synthase | - |
Sequence
Protein
Download Length: 192 a.a. Molecular weight: 22438.91 Da Isoelectric Point: 6.6554
>NTDB_id=330392 EHC70_RS01865 WP_005480484.1 363896..364474(+) (pilN) [Vibrio parahaemolyticus strain 20140624012-1]
MLYRINLLPWRENQREEHRRRFVGLVVLGVMVALGIQWGVGKYYEYQQDLQQERLDYLTTYISDLDKRIEAMKIAELEHS
KILERLKVVEALQNGRNKTTDFMNLMPAVIPEGVYVDKIKMNDLEIEISGISDSTPRLATMLDNMERSAKLLDVEMHSIV
HGKARFGKEFQTFKVSFMFNTVEEQKEGKQHG
MLYRINLLPWRENQREEHRRRFVGLVVLGVMVALGIQWGVGKYYEYQQDLQQERLDYLTTYISDLDKRIEAMKIAELEHS
KILERLKVVEALQNGRNKTTDFMNLMPAVIPEGVYVDKIKMNDLEIEISGISDSTPRLATMLDNMERSAKLLDVEMHSIV
HGKARFGKEFQTFKVSFMFNTVEEQKEGKQHG
Nucleotide
Download Length: 579 bp
>NTDB_id=330392 EHC70_RS01865 WP_005480484.1 363896..364474(+) (pilN) [Vibrio parahaemolyticus strain 20140624012-1]
GTGCTGTATCGCATTAACTTATTGCCTTGGCGCGAAAATCAAAGGGAAGAGCATCGTCGTCGATTTGTCGGTTTAGTGGT
ATTGGGCGTCATGGTGGCGTTGGGGATTCAGTGGGGCGTTGGCAAATATTATGAGTATCAACAAGATCTTCAACAAGAGC
GACTCGACTATCTAACAACGTACATTTCCGATCTAGATAAGCGGATAGAAGCGATGAAGATCGCGGAGCTTGAACACAGC
AAAATCTTGGAACGCTTGAAAGTTGTGGAAGCGTTGCAAAATGGTCGGAATAAAACCACTGATTTTATGAACCTCATGCC
TGCTGTTATTCCAGAAGGCGTATATGTCGACAAGATCAAAATGAACGATCTAGAAATTGAAATCTCAGGTATTTCAGACA
GTACACCACGGCTAGCAACTATGCTCGATAACATGGAACGTTCTGCCAAGCTACTGGACGTTGAAATGCACTCTATCGTG
CACGGAAAAGCCCGTTTTGGTAAAGAGTTTCAGACCTTTAAAGTGTCCTTCATGTTTAACACGGTAGAAGAGCAAAAAGA
GGGAAAACAACATGGTTAA
GTGCTGTATCGCATTAACTTATTGCCTTGGCGCGAAAATCAAAGGGAAGAGCATCGTCGTCGATTTGTCGGTTTAGTGGT
ATTGGGCGTCATGGTGGCGTTGGGGATTCAGTGGGGCGTTGGCAAATATTATGAGTATCAACAAGATCTTCAACAAGAGC
GACTCGACTATCTAACAACGTACATTTCCGATCTAGATAAGCGGATAGAAGCGATGAAGATCGCGGAGCTTGAACACAGC
AAAATCTTGGAACGCTTGAAAGTTGTGGAAGCGTTGCAAAATGGTCGGAATAAAACCACTGATTTTATGAACCTCATGCC
TGCTGTTATTCCAGAAGGCGTATATGTCGACAAGATCAAAATGAACGATCTAGAAATTGAAATCTCAGGTATTTCAGACA
GTACACCACGGCTAGCAACTATGCTCGATAACATGGAACGTTCTGCCAAGCTACTGGACGTTGAAATGCACTCTATCGTG
CACGGAAAAGCCCGTTTTGGTAAAGAGTTTCAGACCTTTAAAGTGTCCTTCATGTTTAACACGGTAGAAGAGCAAAAAGA
GGGAAAACAACATGGTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilN | Vibrio campbellii strain DS40M4 |
83.333 |
100 |
0.833 |
| pilN | Vibrio cholerae strain A1552 |
62.983 |
94.271 |
0.594 |