Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   EIP93_RS18505 Genome accession   NZ_CP034276
Coordinates   4078328..4078873 (+) Length   181 a.a.
NCBI ID   WP_103942327.1    Uniprot ID   -
Organism   Pectobacterium versatile strain 14A     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4073328..4083873
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EIP93_RS18490 (EIP93_18535) cas6f 4073344..4073898 (+) 555 WP_125233099.1 type I-F CRISPR-associated endoribonuclease Cas6/Csy4 -
  EIP93_RS18495 (EIP93_18540) - 4074814..4075233 (-) 420 WP_107333432.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  EIP93_RS18500 (EIP93_18545) uvrA 4075249..4078083 (-) 2835 WP_125233100.1 excinuclease ABC subunit UvrA -
  EIP93_RS18505 (EIP93_18550) ssb 4078328..4078873 (+) 546 WP_103942327.1 single-stranded DNA-binding protein SSB1 Machinery gene
  EIP93_RS18510 (EIP93_18555) - 4079521..4079802 (+) 282 WP_103861804.1 hypothetical protein -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 19175.13 Da        Isoelectric Point: 5.2456

>NTDB_id=330349 EIP93_RS18505 WP_103942327.1 4078328..4078873(+) (ssb) [Pectobacterium versatile strain 14A]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGALQTRKWADQAGVERYTTEVVVNVGGTMQMLGGRQSGGAPAGGGSAGGGQQQGGWGQPQQPQGGNQFSGGAQSQQRPA
QNSAPAQSNEPPMDFDDDIPF

Nucleotide


Download         Length: 546 bp        

>NTDB_id=330349 EIP93_RS18505 WP_103942327.1 4078328..4078873(+) (ssb) [Pectobacterium versatile strain 14A]
ATGGCCAGCAGAGGCGTTAATAAAGTGATTCTTGTCGGGAATCTGGGTCAAGACCCGGAAGTCCGCTATATGCCGAATGG
TGGTGCAGTTGCCAACATCACGCTGGCTACGTCGGAAAGCTGGCGTGACAAGCAAACCGGTGAGCAGAAAGAGAAGACCG
AGTGGCACCGTGTGGTTCTGTTCGGCAAACTGGCAGAAGTCGCAGGCGAATACCTGCGCAAAGGCTCTCAGGTTTACATC
GAAGGCGCACTGCAAACCCGTAAATGGGCCGATCAGGCTGGCGTAGAACGTTACACCACAGAAGTAGTTGTTAACGTCGG
CGGCACCATGCAAATGCTGGGTGGACGCCAGAGCGGCGGCGCACCAGCAGGCGGTGGCAGTGCAGGTGGCGGCCAGCAAC
AAGGCGGTTGGGGTCAACCTCAGCAGCCGCAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAATCTCAGCAGCGCCCGGCA
CAGAACAGCGCTCCAGCGCAAAGCAACGAACCACCAATGGATTTCGACGACGACATTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

72.34

100

0.751
  ssb Glaesserella parasuis strain SC1401

56.842

100

0.597
  ssb Neisseria meningitidis MC58

46.927

98.895

0.464
  ssb Neisseria gonorrhoeae MS11

46.927

98.895

0.464

Multiple sequence alignment