Detailed information NTG0330308

Bioinformatically predicted

Overview

• Name: ruvA
• Type: Machinery gene
• Locus tag: FP482_RS08445
• Genome accession: NZ_CP042153
• Coordinates: 1734188..1734790 (-)
• Length: 200 a.a.
• NCBI ID: WP_000271550.1
• Uniprot ID: P66748
• Organism: Staphylococcus aureus strain B4-59C
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1729188..1739790

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FP482_RS08425 (FP482_08420)	yajC	1730684..1730944 (-)	261	WP_001160682.1	preprotein translocase subunit YajC	-
FP482_RS08430 (FP482_08425)	tgt	1730963..1732102 (-)	1140	WP_001112045.1	tRNA guanosine(34) transglycosylase Tgt	-
FP482_RS08435 (FP482_08430)	queA	1732125..1733150 (-)	1026	WP_001019178.1	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	-
FP482_RS08440 (FP482_08435)	ruvB	1733152..1734156 (-)	1005	WP_001005768.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
FP482_RS08445 (FP482_08440)	ruvA	1734188..1734790 (-)	603	WP_000271550.1	Holliday junction branch migration protein RuvA	Machinery gene
FP482_RS08450 (FP482_08445)	-	1734804..1735259 (-)	456	WP_000368902.1	ACT domain-containing protein	-
FP482_RS08455 (FP482_08450)	obgE	1735272..1736564 (-)	1293	WP_000496100.1	GTPase ObgE	-
FP482_RS08460 (FP482_08455)	rpmA	1736918..1737202 (-)	285	WP_000916187.1	50S ribosomal protein L27	-
FP482_RS08465 (FP482_08460)	-	1737214..1737534 (-)	321	WP_000633692.1	ribosomal-processing cysteine protease Prp	-
FP482_RS08470 (FP482_08465)	rplU	1737540..1737848 (-)	309	WP_000457386.1	50S ribosomal protein L21	-
FP482_RS08475 (FP482_08470)	mreD	1738084..1738614 (-)	531	WP_001259925.1	rod shape-determining protein MreD	-
FP482_RS08480 (FP482_08475)	mreC	1738614..1739456 (-)	843	WP_000911041.1	rod shape-determining protein MreC	-
FP482_RS08485 (FP482_08480)	-	1739655..1739774 (-)	120	WP_000840602.1	hypothetical protein	-

Sequence

Protein

• Length: 200 a.a.
• Molecular weight: 22281.50 Da
• Isoelectric Point: 6.1244

>NTDB_id=330308 FP482_RS08445 WP_000271550.1 1734188..1734790(-) (ruvA) [Staphylococcus aureus strain B4-59C]
MYAYVKGKLTHLYPTHVVVETAGVGYEIQTPNSYRFQKHLDHEVLIRTSLIVREDAQLLYGFSSEEEKDMFLSLIKVTGI
GPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKTARQIVLDLKGKVKITEEDSDSLLQVDATSTVQDQFVQEAML
ALEALGYSKRELAKVEKTLNKNKYDSVDEAVKAGLQLVVS

Nucleotide

• Length: 603 bp

>NTDB_id=330308 FP482_RS08445 WP_000271550.1 1734188..1734790(-) (ruvA) [Staphylococcus aureus strain B4-59C]
ATGTACGCGTATGTCAAAGGTAAGTTAACACATTTATATCCTACACACGTAGTTGTTGAAACTGCTGGTGTTGGTTATGA
AATTCAAACACCAAATTCTTATCGTTTTCAAAAGCATCTAGATCATGAAGTTTTAATTCGTACATCTTTAATTGTTCGTG
AAGATGCACAATTATTGTATGGATTTAGTAGTGAAGAAGAGAAAGATATGTTCTTGAGTTTAATTAAAGTTACTGGTATT
GGTCCGAAATCAGCTTTAGCTATTTTAGCGACAAGTACGCCTAATGAAGTAAAACGTGCCATTGAAAATGAAAATGATAC
GTATTTAACTAAATTCCCAGGAATTGGTAAGAAAACGGCAAGACAGATTGTCTTAGATTTAAAAGGTAAAGTGAAAATCA
CTGAAGAAGATAGCGATTCATTATTACAAGTAGACGCTACTTCGACGGTGCAAGATCAATTCGTGCAAGAAGCAATGTTA
GCGTTAGAAGCATTAGGTTATTCTAAACGAGAGCTTGCAAAAGTTGAGAAAACGTTAAATAAAAATAAATATGACTCAGT
TGATGAAGCTGTTAAGGCAGGTCTTCAATTAGTTGTATCTTAA

Domains

Predicted by InterProScan.

• RuvA, C-terminal domain (RuvA_C) (156-197)

• Helix-hairpin-helix domain (HHH_5) (71-128)

• RuvA N terminal domain (RuvA_N) (1-61)

3D structure

• AlphaFold DB: P66748

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvA	Streptococcus pneumoniae TIGR4	46.231	99.5	0.46
ruvA	Streptococcus pneumoniae R6	45.729	99.5	0.455
ruvA	Streptococcus pneumoniae D39	45.729	99.5	0.455
ruvA	Bacillus subtilis subsp. subtilis str. 168	43.216	99.5	0.43