Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   EIY89_RS18235 Genome accession   NZ_CP034246
Coordinates   4091234..4091935 (-) Length   233 a.a.
NCBI ID   WP_190533461.1    Uniprot ID   -
Organism   Shewanella algae strain VGH117     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4086234..4096935
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EIY89_RS18225 (EIY89_18260) - 4089021..4089935 (-) 915 WP_190533455.1 LysR family transcriptional regulator -
  EIY89_RS18230 (EIY89_18265) - 4090061..4091170 (+) 1110 WP_190533458.1 HisA/HisF-related TIM barrel protein -
  EIY89_RS18235 (EIY89_18270) ssb 4091234..4091935 (-) 702 WP_190533461.1 single-stranded DNA-binding protein Machinery gene
  EIY89_RS18240 (EIY89_18275) - 4091970..4093337 (-) 1368 WP_025010184.1 MFS transporter -
  EIY89_RS18245 (EIY89_18280) uvrA 4093559..4096381 (+) 2823 WP_190533464.1 excinuclease ABC subunit UvrA -
  EIY89_RS18250 (EIY89_18285) - 4096389..4096739 (+) 351 WP_129586019.1 hypothetical protein -

Sequence

Protein


Download         Length: 233 a.a.        Molecular weight: 25685.06 Da        Isoelectric Point: 5.9130

>NTDB_id=330203 EIY89_RS18235 WP_190533461.1 4091234..4091935(-) (ssb) [Shewanella algae strain VGH117]
MASRGVNKVILVGNLGQDPEVRYMPNGNAVANITVATSESWKDQQGQQQERTEWHRVVMFGKLAEIAGEYLRKGSQVYLE
GKLQTRKWKDQSGQDKYTTEVVVDMGGTMQMLGGRNQNQGGMSQGGMNQGGMNQNQGGYGGGQAQSQSQYNAPQQSGGYQ
PKPAQQPQQPQQQYNAPQQQSYGQQQNSGYAPKPQQPAPQQAAPQQRPAPQPQPQQQNYTPDLDDGWDDDIPF

Nucleotide


Download         Length: 702 bp        

>NTDB_id=330203 EIY89_RS18235 WP_190533461.1 4091234..4091935(-) (ssb) [Shewanella algae strain VGH117]
ATGGCCAGTCGTGGTGTTAATAAGGTAATTCTGGTGGGCAATCTGGGACAGGACCCAGAGGTGCGCTACATGCCAAACGG
CAACGCCGTAGCGAATATCACAGTGGCCACCAGTGAGTCATGGAAGGACCAACAGGGCCAACAGCAAGAGCGTACCGAGT
GGCACAGGGTTGTCATGTTCGGCAAGCTGGCTGAAATTGCCGGTGAGTACCTGCGCAAAGGCTCGCAAGTGTATCTGGAA
GGCAAGCTGCAGACCCGCAAGTGGAAAGATCAGAGCGGTCAGGACAAGTACACCACTGAAGTGGTTGTCGACATGGGCGG
TACCATGCAGATGCTGGGTGGCCGTAACCAAAACCAAGGCGGTATGAGCCAGGGCGGTATGAACCAAGGTGGTATGAACC
AAAACCAAGGTGGTTACGGCGGTGGTCAGGCACAGTCTCAATCTCAATACAATGCGCCACAGCAGTCCGGCGGCTATCAG
CCCAAGCCTGCTCAGCAACCGCAGCAGCCACAACAGCAGTACAACGCGCCGCAGCAGCAAAGCTATGGTCAGCAGCAGAA
CTCTGGTTATGCGCCCAAGCCACAGCAGCCAGCGCCGCAACAGGCGGCTCCACAGCAGCGTCCGGCACCACAGCCTCAGC
CACAACAGCAGAACTACACGCCGGATCTGGATGACGGCTGGGATGATGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

54.661

100

0.554
  ssb Glaesserella parasuis strain SC1401

46.957

98.712

0.464
  ssb Neisseria gonorrhoeae MS11

43.421

97.854

0.425
  ssb Neisseria meningitidis MC58

42.544

97.854

0.416

Multiple sequence alignment