Detailed information
Bioinformatically predicted
Overview
| Name | ruvB | Type | Machinery gene |
| Locus tag | BAMF_RS33530 | Genome accession | NC_014551 |
| Coordinates | 2630020..2631024 (-) | Length | 334 a.a. |
| NCBI ID | WP_013353043.1 | Uniprot ID | A0A9P1JIP2 |
| Organism | Bacillus amyloliquefaciens DSM 7 = ATCC 23350 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 2625020..2636024
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BAMF_RS33500 (BAMF_2578) | - | 2626046..2626702 (-) | 657 | WP_013353038.1 | DUF421 domain-containing protein | - |
| BAMF_RS33505 (BAMF_2579) | - | 2626869..2627255 (+) | 387 | WP_013353039.1 | TIGR04086 family membrane protein | - |
| BAMF_RS33510 (BAMF_2580) | yajC | 2627308..2627568 (-) | 261 | WP_003152695.1 | preprotein translocase subunit YajC | - |
| BAMF_RS33515 (BAMF_2581) | tgt | 2627600..2628745 (-) | 1146 | WP_013353040.1 | tRNA guanosine(34) transglycosylase Tgt | - |
| BAMF_RS33520 (BAMF_2582) | queA | 2628773..2629801 (-) | 1029 | WP_013353041.1 | tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA | - |
| BAMF_RS33525 (BAMF_2583) | - | 2629827..2630027 (-) | 201 | WP_013353042.1 | DUF2905 domain-containing protein | - |
| BAMF_RS33530 (BAMF_2584) | ruvB | 2630020..2631024 (-) | 1005 | WP_013353043.1 | Holliday junction branch migration DNA helicase RuvB | Machinery gene |
| BAMF_RS33535 (BAMF_2585) | ruvA | 2631035..2631640 (-) | 606 | WP_003152683.1 | Holliday junction branch migration protein RuvA | Machinery gene |
| BAMF_RS33540 (BAMF_2586) | - | 2631775..2632251 (-) | 477 | WP_038463270.1 | intercompartmental signaling factor BofC | - |
| BAMF_RS42275 (BAMF_2587) | - | 2632417..2632536 (-) | 120 | WP_014470775.1 | hypothetical protein | - |
| BAMF_RS33545 (BAMF_2588) | - | 2632662..2633227 (-) | 566 | Protein_2660 | YhcN/YlaJ family sporulation lipoprotein | - |
| BAMF_RS33550 (BAMF_2590) | safA | 2633376..2634527 (-) | 1152 | WP_013353047.1 | spore coat assembly protein SafA | - |
| BAMF_RS33555 (BAMF_2591) | nadA | 2634654..2635757 (-) | 1104 | WP_013353048.1 | quinolinate synthase NadA | - |
Sequence
Protein
Download Length: 334 a.a. Molecular weight: 37200.48 Da Isoelectric Point: 4.6703
>NTDB_id=32998 BAMF_RS33530 WP_013353043.1 2630020..2631024(-) (ruvB) [Bacillus amyloliquefaciens DSM 7 = ATCC 23350]
MDERLVSSEADSHESIIEQSLRPQNLAQYIGQQKVKENLRVFIDAAKMRQETLDHVLLYGPPGLGKTTLASIVANEMGVE
MRTTSGPAIERPGDLAAILTALEPGDVLFIDEIHRLNRSIEEVLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATT
RVGLLTAPLRDRFGVLSRLEYYTQEELTDIVSRTAEVFEVEIEEAPALEIARRSRGTPRVANRLLRRVRDFAQVLGDSRI
TEEIAHDALERLQVDALGLDHIDHKLLMGMIEKFSGGPVGLDTISATIGEEPHTIEDVYEPYLLQIGFLQRTPRGRVVTP
AVYEHFRLEAPACD
MDERLVSSEADSHESIIEQSLRPQNLAQYIGQQKVKENLRVFIDAAKMRQETLDHVLLYGPPGLGKTTLASIVANEMGVE
MRTTSGPAIERPGDLAAILTALEPGDVLFIDEIHRLNRSIEEVLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATT
RVGLLTAPLRDRFGVLSRLEYYTQEELTDIVSRTAEVFEVEIEEAPALEIARRSRGTPRVANRLLRRVRDFAQVLGDSRI
TEEIAHDALERLQVDALGLDHIDHKLLMGMIEKFSGGPVGLDTISATIGEEPHTIEDVYEPYLLQIGFLQRTPRGRVVTP
AVYEHFRLEAPACD
Nucleotide
Download Length: 1005 bp
>NTDB_id=32998 BAMF_RS33530 WP_013353043.1 2630020..2631024(-) (ruvB) [Bacillus amyloliquefaciens DSM 7 = ATCC 23350]
ATGGATGAACGGCTCGTTTCAAGTGAAGCAGACAGCCATGAATCAATAATCGAGCAAAGCCTCAGGCCGCAGAACCTCGC
CCAGTACATCGGGCAGCAGAAGGTAAAAGAAAATCTGCGCGTGTTTATCGATGCGGCGAAAATGAGGCAGGAAACGCTTG
ACCACGTTCTTTTATACGGGCCTCCGGGTCTCGGAAAAACAACGCTCGCGTCTATCGTGGCCAATGAGATGGGTGTGGAG
ATGCGGACGACGTCAGGCCCCGCTATCGAAAGACCGGGAGACTTGGCAGCCATTCTGACGGCGCTCGAACCCGGGGATGT
GCTGTTTATAGACGAAATTCACAGACTGAACCGGTCAATCGAAGAAGTGCTGTACCCGGCGATGGAGGACTTCTGCCTTG
ATATCGTTATTGGAAAAGGCCCGTCCGCCCGCTCCGTCCGCCTTGACCTTCCGCCTTTTACGCTGGTAGGAGCGACGACC
AGGGTCGGCTTATTGACCGCGCCGCTCAGAGACCGGTTCGGGGTGCTGTCCCGCCTTGAATACTATACGCAGGAAGAACT
GACAGATATCGTGTCAAGAACGGCTGAAGTATTCGAAGTTGAAATCGAAGAAGCCCCGGCTTTGGAAATCGCCAGACGGT
CAAGGGGAACGCCGCGGGTTGCAAACCGGCTTCTCAGAAGGGTGAGAGATTTTGCCCAAGTGCTAGGTGACAGCCGCATC
ACGGAAGAAATCGCTCACGACGCGCTCGAACGTCTTCAAGTCGACGCACTCGGCCTTGACCATATTGACCATAAGCTGCT
GATGGGCATGATTGAAAAATTCAGCGGCGGTCCCGTCGGCCTTGATACGATTTCCGCGACAATCGGTGAAGAACCGCATA
CAATAGAGGATGTGTACGAACCGTATCTGCTTCAGATCGGATTTCTCCAAAGGACGCCGAGAGGACGGGTCGTGACCCCG
GCTGTGTATGAGCATTTTCGATTGGAGGCACCCGCCTGTGACTGA
ATGGATGAACGGCTCGTTTCAAGTGAAGCAGACAGCCATGAATCAATAATCGAGCAAAGCCTCAGGCCGCAGAACCTCGC
CCAGTACATCGGGCAGCAGAAGGTAAAAGAAAATCTGCGCGTGTTTATCGATGCGGCGAAAATGAGGCAGGAAACGCTTG
ACCACGTTCTTTTATACGGGCCTCCGGGTCTCGGAAAAACAACGCTCGCGTCTATCGTGGCCAATGAGATGGGTGTGGAG
ATGCGGACGACGTCAGGCCCCGCTATCGAAAGACCGGGAGACTTGGCAGCCATTCTGACGGCGCTCGAACCCGGGGATGT
GCTGTTTATAGACGAAATTCACAGACTGAACCGGTCAATCGAAGAAGTGCTGTACCCGGCGATGGAGGACTTCTGCCTTG
ATATCGTTATTGGAAAAGGCCCGTCCGCCCGCTCCGTCCGCCTTGACCTTCCGCCTTTTACGCTGGTAGGAGCGACGACC
AGGGTCGGCTTATTGACCGCGCCGCTCAGAGACCGGTTCGGGGTGCTGTCCCGCCTTGAATACTATACGCAGGAAGAACT
GACAGATATCGTGTCAAGAACGGCTGAAGTATTCGAAGTTGAAATCGAAGAAGCCCCGGCTTTGGAAATCGCCAGACGGT
CAAGGGGAACGCCGCGGGTTGCAAACCGGCTTCTCAGAAGGGTGAGAGATTTTGCCCAAGTGCTAGGTGACAGCCGCATC
ACGGAAGAAATCGCTCACGACGCGCTCGAACGTCTTCAAGTCGACGCACTCGGCCTTGACCATATTGACCATAAGCTGCT
GATGGGCATGATTGAAAAATTCAGCGGCGGTCCCGTCGGCCTTGATACGATTTCCGCGACAATCGGTGAAGAACCGCATA
CAATAGAGGATGTGTACGAACCGTATCTGCTTCAGATCGGATTTCTCCAAAGGACGCCGAGAGGACGGGTCGTGACCCCG
GCTGTGTATGAGCATTTTCGATTGGAGGCACCCGCCTGTGACTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ruvB | Bacillus subtilis subsp. subtilis str. 168 |
91.916 |
100 |
0.919 |
| ruvB | Streptococcus pneumoniae TIGR4 |
60.736 |
97.605 |
0.593 |
| ruvB | Streptococcus pneumoniae R6 |
60.736 |
97.605 |
0.593 |
| ruvB | Streptococcus pneumoniae D39 |
60.736 |
97.605 |
0.593 |
| ruvB | Synechocystis sp. PCC 6803 |
58.359 |
98.503 |
0.575 |
| ruvB | Helicobacter pylori 26695 |
52.439 |
98.204 |
0.515 |