Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | EH164_RS20700 | Genome accession | NZ_CP034225 |
| Coordinates | 4402338..4402868 (-) | Length | 176 a.a. |
| NCBI ID | WP_124970627.1 | Uniprot ID | - |
| Organism | Kosakonia sp. CCTCC M2018092 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 4397338..4407868
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EH164_RS20685 (EH164_20685) | - | 4398924..4399370 (-) | 447 | WP_124970618.1 | hypothetical protein | - |
| EH164_RS20690 (EH164_20690) | - | 4399519..4401114 (-) | 1596 | WP_124970621.1 | glycosyl hydrolase family 18 protein | - |
| EH164_RS22850 | - | 4401343..4401471 (-) | 129 | WP_255411413.1 | hypothetical protein | - |
| EH164_RS20695 (EH164_20695) | - | 4401723..4402265 (+) | 543 | WP_124970624.1 | chorismate mutase | - |
| EH164_RS20700 (EH164_20700) | ssb | 4402338..4402868 (-) | 531 | WP_124970627.1 | single-stranded DNA-binding protein SSB1 | Machinery gene |
| EH164_RS20705 (EH164_20705) | uvrA | 4403125..4405950 (+) | 2826 | WP_042712659.1 | excinuclease ABC subunit UvrA | - |
| EH164_RS20710 (EH164_20710) | - | 4405951..4406304 (-) | 354 | WP_124970630.1 | MmcQ/YjbR family DNA-binding protein | - |
| EH164_RS20715 (EH164_20715) | - | 4406308..4406724 (-) | 417 | WP_124970633.1 | secondary thiamine-phosphate synthase enzyme YjbQ | - |
| EH164_RS20720 (EH164_20720) | aphA | 4406823..4407533 (-) | 711 | WP_124970636.1 | acid phosphatase AphA | - |
Sequence
Protein
Download Length: 176 a.a. Molecular weight: 18966.93 Da Isoelectric Point: 5.2456
>NTDB_id=329895 EH164_RS20700 WP_124970627.1 4402338..4402868(-) (ssb) [Kosakonia sp. CCTCC M2018092]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGQEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGNNNQFSGGAQSRPQQQSAPA
QSNNEPPMDFDDDIPF
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGQEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGNNNQFSGGAQSRPQQQSAPA
QSNNEPPMDFDDDIPF
Nucleotide
Download Length: 531 bp
>NTDB_id=329895 EH164_RS20700 WP_124970627.1 4402338..4402868(-) (ssb) [Kosakonia sp. CCTCC M2018092]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTATATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACGTCCGAATCGTGGCGTGACAAAGCGACCGGAGAGATGAAAGAGCAGACCG
AGTGGCACCGCGTTGTGCTGTTCGGCAAACTGGCGGAAGTTGCCGGTGAGTATCTGCGTAAAGGTTCTCAGGTCTACATC
GAAGGCCAGCTGCGCACCCGCAAATGGACCGATCAGTCCGGCCAGGAAAAGTACACTACCGAAGTTGTAGTGAACGTTGG
CGGCACCATGCAGATGCTGGGCGGTCGCCAGGGCGGCGGTGCACCGGCAGGCGGTGGCCAGCAGCAGGGCGGTTGGGGTC
AGCCTCAGCAGCCGCAGGGCAACAACAACCAGTTCAGCGGCGGCGCGCAGTCTCGTCCGCAGCAGCAGTCTGCCCCGGCA
CAGTCTAACAACGAACCGCCGATGGATTTCGACGACGATATCCCGTTCTGA
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTATATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACGTCCGAATCGTGGCGTGACAAAGCGACCGGAGAGATGAAAGAGCAGACCG
AGTGGCACCGCGTTGTGCTGTTCGGCAAACTGGCGGAAGTTGCCGGTGAGTATCTGCGTAAAGGTTCTCAGGTCTACATC
GAAGGCCAGCTGCGCACCCGCAAATGGACCGATCAGTCCGGCCAGGAAAAGTACACTACCGAAGTTGTAGTGAACGTTGG
CGGCACCATGCAGATGCTGGGCGGTCGCCAGGGCGGCGGTGCACCGGCAGGCGGTGGCCAGCAGCAGGGCGGTTGGGGTC
AGCCTCAGCAGCCGCAGGGCAACAACAACCAGTTCAGCGGCGGCGCGCAGTCTCGTCCGCAGCAGCAGTCTGCCCCGGCA
CAGTCTAACAACGAACCGCCGATGGATTTCGACGACGATATCCCGTTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
74.194 |
100 |
0.784 |
| ssb | Glaesserella parasuis strain SC1401 |
57.065 |
100 |
0.597 |
| ssb | Neisseria meningitidis MC58 |
45.81 |
100 |
0.466 |
| ssb | Neisseria gonorrhoeae MS11 |
45.81 |
100 |
0.466 |