Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   FN958_RS23510 Genome accession   NZ_CP041996
Coordinates   4863957..4865786 (-) Length   609 a.a.
NCBI ID   WP_024179510.1    Uniprot ID   -
Organism   Escherichia coli strain AR Bank #0349     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4858957..4870786
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FN958_RS23485 (FN958_23485) bioP 4859675..4860574 (-) 900 WP_001196248.1 biotin transporter -
  FN958_RS23490 (FN958_23490) yigL 4860650..4861450 (-) 801 WP_000285353.1 sugar/pyridoxal phosphate phosphatase YigL -
  FN958_RS23495 (FN958_23495) pldB 4861458..4862480 (-) 1023 WP_000487672.1 lysophospholipase L2 -
  FN958_RS23500 (FN958_23500) rhtB 4862591..4863211 (+) 621 WP_061093014.1 homoserine/homoserine lactone efflux protein -
  FN958_RS23505 (FN958_23505) rhtC 4863273..4863893 (-) 621 WP_000928839.1 threonine export protein RhtC -
  FN958_RS23510 (FN958_23510) recQ 4863957..4865786 (-) 1830 WP_024179510.1 ATP-dependent DNA helicase RecQ Machinery gene
  FN958_RS23515 (FN958_23515) pldA 4865911..4866780 (-) 870 WP_001259693.1 phospholipase A -
  FN958_RS23520 (FN958_23520) yigI 4866945..4867412 (+) 468 WP_001277142.1 acyl-CoA thioesterase YigI -
  FN958_RS23525 (FN958_23525) rarD 4867464..4868354 (+) 891 WP_000339104.1 EamA family transporter RarD -
  FN958_RS23530 (FN958_23530) - 4868665..4869513 (+) 849 WP_001059676.1 YPO3983 family protein -
  FN958_RS23535 (FN958_23535) - 4869510..4870007 (+) 498 WP_000823792.1 DUF943 family protein -

Sequence

Protein


Download         Length: 609 a.a.        Molecular weight: 68391.56 Da        Isoelectric Point: 7.2543

>NTDB_id=329344 FN958_RS23510 WP_024179510.1 4863957..4865786(-) (recQ) [Escherichia coli strain AR Bank #0349]
MAQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLISLMKD
QVDQLQANGVAAACLNSTQTREQQLDVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRP
EYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPLDQLMRYVQEQRGKSGI
IYCNSRAKVEDTAARLQSKGISAAAYHAGLENNIRVDVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESY
YQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEEKPQGQLQDIERHKLNAMGAFAEAQTCRRLVLLNYFGEGRQEPCGNC
DICLDPPKQYDGSTDAQIALSTIGRVNQRFGMGYVVEVIRGANNQRIRDYGHDKLKVYGMGRDKSHEHWVSVIRQLIHLG
LVTQNIAQHSALQLTEAARPVLRGESSLQLAVPRIVALKPKAMQKSFGGNYDRKLFAKLRKLRKSIADESNVPPYVVFND
ATLIEMAEQMPITASEMLSVNGVGMRKLERFGKPFMALIRAHVDGDDEE

Nucleotide


Download         Length: 1830 bp        

>NTDB_id=329344 FN958_RS23510 WP_024179510.1 4863957..4865786(-) (recQ) [Escherichia coli strain AR Bank #0349]
GTGGCGCAGGCGGAAGTGTTGAATCTGGAGTCCGGAGCTAAACAGGTTTTACAAGAAACCTTTGGCTACCAACAGTTTCG
CCCCGGCCAGGAAGAAATTATCGACACTGTGCTTTCCGGCCGCGATTGCCTCGTCGTCATGCCCACTGGTGGCGGAAAAT
CCCTTTGCTATCAAATCCCTGCCTTATTGCTAAACGGCCTTACCGTGGTTGTTTCACCGCTGATTTCGTTGATGAAAGAT
CAGGTGGATCAACTGCAAGCCAACGGCGTGGCGGCGGCGTGCCTTAACTCGACGCAAACCCGCGAGCAGCAACTTGACGT
GATGACAGGCTGTCGCACCGGGCAAATCCGCCTGCTGTATATCGCGCCGGAACGCCTGATGCTGGATAACTTCCTTGAGC
ATCTGGCGCACTGGAATCCGGTGTTATTAGCCGTTGATGAAGCGCACTGTATCTCCCAATGGGGGCACGATTTCCGCCCG
GAATACGCCGCGCTCGGTCAGCTGCGTCAGCGTTTTCCTACTCTGCCGTTTATGGCGCTAACCGCCACCGCCGACGACAC
CACGCGGCAGGATATCGTGCGCCTGCTGGGGCTGAACGATCCGCTGATTCAAATCAGCAGTTTTGATCGCCCGAACATTC
GCTACATGCTGATGGAGAAATTCAAACCGCTCGATCAGTTGATGCGCTACGTGCAGGAACAACGCGGTAAGTCGGGGATT
ATTTACTGCAACAGCCGGGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCA
TGCCGGGCTGGAAAATAATATTCGCGTCGACGTGCAGGAAAAATTTCAGCGCGATGACCTGCAAATTGTGGTGGCGACCG
TGGCGTTTGGCATGGGCATCAACAAGCCTAACGTCCGCTTCGTGGTCCACTTTGATATTCCGCGCAATATCGAATCCTAT
TATCAGGAAACCGGTCGCGCCGGGCGTGATGGCCTGCCCGCGGAAGCGATGCTGTTTTACGATCCGGCCGATATGGCGTG
GCTACGCCGTTGTCTGGAAGAGAAGCCGCAGGGGCAATTGCAGGATATCGAGCGCCATAAACTCAATGCGATGGGCGCGT
TTGCCGAAGCGCAAACTTGCCGTCGTCTGGTGCTGCTGAACTACTTTGGCGAAGGGCGGCAGGAGCCGTGCGGGAACTGC
GATATCTGCCTCGATCCGCCGAAACAATACGATGGTTCAACCGATGCTCAGATTGCCCTTTCCACCATTGGTCGTGTGAA
TCAGCGGTTTGGGATGGGTTATGTGGTGGAAGTGATTCGTGGCGCTAATAACCAGCGTATCCGCGACTATGGTCATGACA
AACTGAAAGTCTATGGCATGGGCCGTGATAAAAGCCATGAACATTGGGTGAGCGTGATCCGCCAGCTGATTCACCTCGGC
CTGGTGACGCAAAATATTGCCCAGCATTCTGCCCTACAACTGACAGAGGCTGCGCGTCCGGTGCTGCGCGGCGAATCCTC
TTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTCAAACCGAAAGCGATGCAGAAATCGTTCGGCGGCAACTATGATCGCA
AACTGTTCGCCAAATTACGCAAACTGCGTAAATCGATTGCCGATGAAAGCAATGTCCCGCCGTACGTGGTGTTTAACGAC
GCAACCTTGATTGAGATGGCTGAACAGATGCCGATCACCGCCAGCGAAATGCTCAGCGTTAACGGCGTTGGGATGCGCAA
GCTGGAACGCTTTGGTAAACCGTTTATGGCGCTTATCCGCGCGCATGTCGATGGTGACGACGAAGAGTAG

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(223-330)

RQC domain (RQC)

(406-514)

DEAD/DEAH box helicase (DEAD)

(28-187)

HRDC domain (HRDC)

(533-599)

RecQ zinc-binding (RecQ_Zn_bind)

(343-404)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

39.865

97.209

0.388

Multiple sequence alignment