Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB9   Type   Machinery gene
Locus tag   EAL91_RS01100 Genome accession   NZ_CP034147
Coordinates   222112..223104 (-) Length   330 a.a.
NCBI ID   WP_121054121.1    Uniprot ID   -
Organism   Helicobacter pylori strain HP14039     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 217112..228104
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EAL91_RS01080 - 217400..218332 (-) 933 WP_121054117.1 GDP-L-fucose synthase -
  EAL91_RS01085 gmd 218325..219470 (-) 1146 WP_121054118.1 GDP-mannose 4,6-dehydratase -
  EAL91_RS01090 - 219500..220912 (-) 1413 WP_121054119.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  EAL91_RS01095 comB10 220983..222119 (-) 1137 WP_121054120.1 DNA type IV secretion system protein ComB10 Machinery gene
  EAL91_RS01100 comB9 222112..223104 (-) 993 WP_121054121.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  EAL91_RS01105 comB8 223104..223847 (-) 744 WP_121054122.1 virB8 family protein Machinery gene
  EAL91_RS01110 comB7 223844..223957 (-) 114 WP_001217870.1 hypothetical protein Machinery gene
  EAL91_RS01115 comB6 223973..225028 (-) 1056 WP_121054123.1 P-type conjugative transfer protein TrbL Machinery gene
  EAL91_RS01120 - 225036..226040 (-) 1005 WP_121054124.1 PDZ domain-containing protein -
  EAL91_RS01125 - 226040..226342 (-) 303 WP_000347926.1 YbaB/EbfC family nucleoid-associated protein -
  EAL91_RS01130 panD 226345..226698 (-) 354 WP_000142278.1 aspartate 1-decarboxylase -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 38154.92 Da        Isoelectric Point: 9.5389

>NTDB_id=329342 EAL91_RS01100 WP_121054121.1 222112..223104(-) (comB9) [Helicobacter pylori strain HP14039]
MRKFLYALMGFLLAFSVLKADDFLEEANETAPAHLNHPMQDLNAIQGSFFDKNRSKMSNTLNIDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKIFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFLKPQKENKENKENKENTLENAPTNNKPLKEEKEETKEKEEETIAIGDNTNAMKIVKKDIQKGYKALKSSQRKWY
CLGICSKKSKLSLMPKEIFNDKQFTYFKFDKRLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLC
IRFVKKAKDE

Nucleotide


Download         Length: 993 bp        

>NTDB_id=329342 EAL91_RS01100 WP_121054121.1 222112..223104(-) (comB9) [Helicobacter pylori strain HP14039]
ATGCGGAAATTTTTATATGCTCTCATGGGCTTTTTGTTGGCTTTTAGCGTTTTAAAAGCCGATGACTTTTTAGAAGAAGC
GAACGAAACAGCCCCGGCGCATTTAAACCACCCCATGCAGGATTTAAACGCCATTCAAGGGAGCTTTTTTGACAAAAACC
GCTCAAAAATGTCCAACACTTTGAACATTGATTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGATGCGAAAATCTTAGAAAG
CAACGATCGCATTTTACTCATCAAGCCTTTACAAATCGGCGTGGATTCTAATATCAGCGTGATTGATAATGAGGGTAAGA
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACCAGCTCCAAACACCCTAATTTGCAGGTTTTCATAGAAGATAAAAAT
TATTATTCTAACGCTTTTTTGAAGCCCCAAAAAGAAAATAAAGAAAATAAAGAAAATAAAGAAAATACCCTTGAAAACGC
TCCCACAAACAACAAACCCTTAAAAGAAGAAAAAGAAGAAACCAAAGAAAAAGAAGAAGAGACTATAGCTATTGGCGATA
ACACCAATGCGATGAAAATCGTTAAAAAAGACATTCAAAAAGGCTATAAGGCTTTAAAAAGCTCTCAAAGGAAATGGTAT
TGTTTAGGGATTTGTTCTAAAAAATCCAAGCTCTCTTTGATGCCTAAAGAAATTTTTAACGACAAACAATTCACTTATTT
CAAATTTGACAAAAGATTAGCACTCTCTAAATTCCCGGTGATTTATAAAGTCGTTGATGGCTATGATAACCCGGTAAATA
CTAGGATTGTGGGCGATTACATTATCGCTGAAGACGTTTCGGCTAAATGGACTTTAAGGCTGGGCAAGGACTATTTGTGC
ATCCGTTTTGTCAAAAAGGCTAAAGATGAATAA

Domains

Predicted by InterproScan.

Conjugal transfer protein (CagX)

(62-321)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB9 Helicobacter pylori P1

94.864

100

0.952

Multiple sequence alignment