Detailed information NTG0329345

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: EAL91_RS01115
• Genome accession: NZ_CP034147
• Coordinates: 223973..225028 (-)
• Length: 351 a.a.
• NCBI ID: WP_121054123.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain HP14039
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 218973..230028

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EAL91_RS01090	-	219500..220912 (-)	1413	WP_121054119.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
EAL91_RS01095	comB10	220983..222119 (-)	1137	WP_121054120.1	DNA type IV secretion system protein ComB10	Machinery gene
EAL91_RS01100	comB9	222112..223104 (-)	993	WP_121054121.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
EAL91_RS01105	comB8	223104..223847 (-)	744	WP_121054122.1	virB8 family protein	Machinery gene
EAL91_RS01110	comB7	223844..223957 (-)	114	WP_001217870.1	hypothetical protein	Machinery gene
EAL91_RS01115	comB6	223973..225028 (-)	1056	WP_121054123.1	P-type conjugative transfer protein TrbL	Machinery gene
EAL91_RS01120	-	225036..226040 (-)	1005	WP_121054124.1	PDZ domain-containing protein	-
EAL91_RS01125	-	226040..226342 (-)	303	WP_000347926.1	YbaB/EbfC family nucleoid-associated protein	-
EAL91_RS01130	panD	226345..226698 (-)	354	WP_000142278.1	aspartate 1-decarboxylase	-
EAL91_RS01135	-	226688..228910 (-)	2223	WP_121054125.1	ATP-dependent Clp protease ATP-binding subunit	-
EAL91_RS01140	-	228910..229185 (-)	276	WP_120858627.1	ATP-dependent Clp protease adaptor ClpS	-
EAL91_RS01145	-	229200..229613 (-)	414	WP_001023008.1	universal stress protein	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39720.68 Da
• Isoelectric Point: 9.2387

>NTDB_id=329345 EAL91_RS01115 WP_121054123.1 223973..225028(-) (comB6) [Helicobacter pylori strain HP14039]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSVSTLLEALWFVGFFALFNY
ALKNPSRFYELFQNAIFIAPNMITKSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQALFLSVL
FAIIILVYLEAHVWCSLGALFLAFGFFKTWRSVVVICLKKCFALGFYKPFLLLVGFLNVSVTKALMDASMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALNSLQYITTSPAPSSVSASTSGSVSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=329345 EAL91_RS01115 WP_121054123.1 223973..225028(-) (comB6) [Helicobacter pylori strain HP14039]
ATGAAAAATGACGCTTATGAAATCATTCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTCCTCTACACTTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTTTTCAGCGTTAGCACGCTTTTAGAGGCGTTATGGTTTGTGGGGTTTTTTGCACTGTTTAACTAC
GCTTTGAAAAACCCTTCGCGCTTTTATGAATTGTTTCAAAACGCTATTTTTATTGCGCCTAACATGATCACGAAAAGCCT
TTCTCAAAGCTTGAGTAACTTTTCTAACCATGCGCTTTCTTTAGATTTTATCTTCAATCATGGTTTTTATGCCCTTAGCT
TTATTAGCGATTTGAGCCATAATGAAATGTCCGTGTGGCTTTTTTTAAGCATTTTGCAAGCGCTTTTTTTGAGCGTTTTG
TTTGCGATTATCATTTTAGTGTATTTGGAAGCGCATGTGTGGTGCTCTTTAGGGGCGCTGTTTTTAGCGTTTGGGTTTTT
CAAAACCTGGAGGAGCGTTGTGGTTATATGCCTTAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAACGTGTCGGTTACTAAGGCTTTAATGGACGCTAGCATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATTAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCCACCAATTTGAGCGCTAACCTCAGCCAAAACGCTCTCAATTCTTTACAATATATCA
CGACTTCGCCCGCTCCCTCTAGCGTTTCTGCTTCTACAAGCGGTAGCGTTTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTTAAGGTAGAAACCACTCAATTAGATGTAAAAATTCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	94.017	100	0.94