Detailed information NTG0329341

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: EAL91_RS01095
• Genome accession: NZ_CP034147
• Coordinates: 220983..222119 (-)
• Length: 378 a.a.
• NCBI ID: WP_121054120.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain HP14039
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 215983..227119

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EAL91_RS01075	-	216715..217056 (+)	342	WP_121054116.1	hypothetical protein	-
EAL91_RS01080	-	217400..218332 (-)	933	WP_121054117.1	GDP-L-fucose synthase	-
EAL91_RS01085	gmd	218325..219470 (-)	1146	WP_121054118.1	GDP-mannose 4,6-dehydratase	-
EAL91_RS01090	-	219500..220912 (-)	1413	WP_121054119.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
EAL91_RS01095	comB10	220983..222119 (-)	1137	WP_121054120.1	DNA type IV secretion system protein ComB10	Machinery gene
EAL91_RS01100	comB9	222112..223104 (-)	993	WP_121054121.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
EAL91_RS01105	comB8	223104..223847 (-)	744	WP_121054122.1	virB8 family protein	Machinery gene
EAL91_RS01110	comB7	223844..223957 (-)	114	WP_001217870.1	hypothetical protein	Machinery gene
EAL91_RS01115	comB6	223973..225028 (-)	1056	WP_121054123.1	P-type conjugative transfer protein TrbL	Machinery gene
EAL91_RS01120	-	225036..226040 (-)	1005	WP_121054124.1	PDZ domain-containing protein	-
EAL91_RS01125	-	226040..226342 (-)	303	WP_000347926.1	YbaB/EbfC family nucleoid-associated protein	-
EAL91_RS01130	panD	226345..226698 (-)	354	WP_000142278.1	aspartate 1-decarboxylase	-

Sequence

Protein

• Length: 378 a.a.
• Molecular weight: 42147.77 Da
• Isoelectric Point: 9.9021

>NTDB_id=329341 EAL91_RS01095 WP_121054120.1 220983..222119(-) (comB10) [Helicobacter pylori strain HP14039]
MNKWLKGAIVFVGGFATIITISLIYHQKPKAPLNNQPSLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNYSKEETFKSPPMDLKTNTTPPKKDFSLKQLDLLAARITPFKQGPKNYEENLIFPVDNPNGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGATNFFGDYLLMQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK

Nucleotide

• Length: 1137 bp

>NTDB_id=329341 EAL91_RS01095 WP_121054120.1 220983..222119(-) (comB10) [Helicobacter pylori strain HP14039]
ATGAATAAGTGGCTTAAGGGGGCGATTGTTTTTGTAGGGGGTTTTGCAACGATTATAACCATTTCTTTAATCTATCATCA
AAAGCCAAAAGCCCCCTTAAATAACCAACCTAGCCTTTTAAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACCAACACGGAAAGCTCCAAAGACGCTACCATCAAAGCCTTACAAGAACAGCTAAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAATTATTCCAAAGAAGAAACTTTTAAGAGCCCTCCCATGGATTTAAAAAC
AAACACAACCCCCCCTAAAAAAGATTTTTCTCTAAAGCAATTAGATTTATTAGCCGCTCGCATCACCCCTTTCAAACAAG
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCTGTGGATAACCCTAATGGCATTGATGGTTTCACTAACCTTAAAGAA
AAAGACATCGCCACTAATGAAAACAAGCTTTTACGCACCATTACAGCGGATAAAATGATACCCGCTTTTTTGATCACGCC
CATTTCTAGCCAGATCGCTGGTAAAGTGATTGCGCAAGTGGAAAGCGATATTTTCGCTCACATGGGCAAAGCTGTTTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGT
CGCATCATCACTCCCCATGGGATTAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTAGT
GGGGGAATTGATTGAAAGGAATTTCCAACGCTATGGCGTGCCGTTACTGCTTTCTACGCTCACTAACGGCTTATTGATTG
GGATCACTTCGGCTTTAAACAACAGAGGCAATAAAGAAGGAGCCACCAATTTCTTTGGGGATTATCTCTTAATGCAATTG
ATGAGGCAAAGCGGTATGGGGATCAACCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCCCCTATTGTGGT
GATTAGAGAGGGAAGCAGGGTATTTATTTCGCCCAATACTGATATCTTCTTCCCTATACCCAGAGAGAATGAAGTCATCG
CTGAGTTTTTGAAGTGA

Domains

Predicted by InterproScan.

• Bacterial conjugation TrbI-like protein (TrbI) (173-364)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	97.354	100	0.974