Detailed information
Bioinformatically predicted
Overview
| Name | comYH | Type | Machinery gene |
| Locus tag | SUB_RS00765 | Genome accession | NC_012004 |
| Coordinates | 126562..127518 (+) | Length | 318 a.a. |
| NCBI ID | WP_012657680.1 | Uniprot ID | - |
| Organism | Streptococcus uberis 0140J | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 121562..132518
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SUB_RS00725 (SUB0117) | - | 122433..122798 (+) | 366 | WP_041817508.1 | DUF1033 family protein | - |
| SUB_RS00730 (SUB0118) | comGA/cglA | 122871..123812 (+) | 942 | WP_012657673.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| SUB_RS00735 (SUB0119) | comYB | 123724..124779 (+) | 1056 | WP_172631729.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| SUB_RS00740 (SUB0120) | comGC/cglC | 124780..125103 (+) | 324 | WP_012657675.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| SUB_RS00745 (SUB0121) | comGD | 125057..125494 (+) | 438 | WP_012657676.1 | competence type IV pilus minor pilin ComGD | - |
| SUB_RS00750 (SUB0122) | comGE | 125466..125765 (+) | 300 | WP_012657677.1 | competence type IV pilus minor pilin ComGE | - |
| SUB_RS00755 (SUB0123) | comGF | 125725..126180 (+) | 456 | WP_012657678.1 | competence type IV pilus minor pilin ComGF | - |
| SUB_RS00760 (SUB0124) | comGG | 126158..126517 (+) | 360 | WP_012657679.1 | competence type IV pilus minor pilin ComGG | - |
| SUB_RS00765 (SUB0125) | comYH | 126562..127518 (+) | 957 | WP_012657680.1 | class I SAM-dependent methyltransferase | Machinery gene |
| SUB_RS00770 (SUB0126) | - | 127574..128764 (+) | 1191 | WP_012657681.1 | acetate kinase | - |
| SUB_RS00775 (SUB0127) | - | 128882..129085 (+) | 204 | WP_012657682.1 | helix-turn-helix transcriptional regulator | - |
| SUB_RS00780 (SUB0128) | - | 129087..129539 (+) | 453 | WP_012657683.1 | hypothetical protein | - |
| SUB_RS00785 (SUB0129) | - | 129548..130201 (+) | 654 | WP_012657684.1 | CPBP family intramembrane glutamic endopeptidase | - |
| SUB_RS00790 (SUB0130) | proC | 130227..130997 (-) | 771 | WP_012657685.1 | pyrroline-5-carboxylate reductase | - |
| SUB_RS00795 (SUB0131) | pepA | 131019..132083 (-) | 1065 | WP_012657686.1 | glutamyl aminopeptidase | - |
Sequence
Protein
Download Length: 318 a.a. Molecular weight: 35970.96 Da Isoelectric Point: 4.7256
>NTDB_id=32907 SUB_RS00765 WP_012657680.1 126562..127518(+) (comYH) [Streptococcus uberis 0140J]
MNFEKIEKAYELILENAQLIENDLKTHIYDALIEQNSFYLGSPGASDHVAKNNEALAALSLSKEEWRRAFQFVFIKAGQT
EQLQANHQFTPDSIAFILLFLLEELSSNDTLDILEIGSGTGNLAQTLLNNSKKSLDYLGIELDDLLIDLSASIAEIIGSS
ARFIQEDAVRPQILKESDVIISDLPVGYYPNDDIARRYQVASPKEHTYAHHLLMEQSLKYLKQGGYALFLVPSNLLTSQQ
SDLLKKWLTDYAQVMALVTLPETLFGHPSNAKSILVLQKKAEKVGETFVYPLTDLQNPEIIRHFMTEFKKWKQDNVFS
MNFEKIEKAYELILENAQLIENDLKTHIYDALIEQNSFYLGSPGASDHVAKNNEALAALSLSKEEWRRAFQFVFIKAGQT
EQLQANHQFTPDSIAFILLFLLEELSSNDTLDILEIGSGTGNLAQTLLNNSKKSLDYLGIELDDLLIDLSASIAEIIGSS
ARFIQEDAVRPQILKESDVIISDLPVGYYPNDDIARRYQVASPKEHTYAHHLLMEQSLKYLKQGGYALFLVPSNLLTSQQ
SDLLKKWLTDYAQVMALVTLPETLFGHPSNAKSILVLQKKAEKVGETFVYPLTDLQNPEIIRHFMTEFKKWKQDNVFS
Nucleotide
Download Length: 957 bp
>NTDB_id=32907 SUB_RS00765 WP_012657680.1 126562..127518(+) (comYH) [Streptococcus uberis 0140J]
ATGAACTTTGAAAAAATTGAAAAAGCTTACGAGCTAATATTGGAAAATGCCCAATTAATTGAAAATGATTTAAAAACCCA
TATATATGATGCCTTAATCGAGCAAAATTCTTTCTATTTAGGTAGCCCAGGTGCTAGTGACCATGTTGCTAAAAACAATG
AAGCGTTAGCTGCCTTGTCTTTAAGTAAGGAAGAATGGCGGAGAGCCTTTCAGTTTGTCTTCATTAAAGCTGGTCAGACG
GAACAATTACAAGCCAACCATCAGTTTACTCCTGACAGTATTGCCTTTATTCTCTTATTTTTGTTAGAAGAATTGAGTTC
AAATGATACCTTGGATATTCTAGAAATTGGAAGTGGTACTGGAAACTTAGCCCAAACTCTTCTAAACAATAGCAAGAAAT
CATTGGATTATCTAGGGATTGAATTGGATGATTTGTTGATTGATTTATCCGCAAGTATTGCTGAGATTATTGGATCTTCA
GCACGTTTTATTCAAGAAGATGCTGTGCGACCTCAAATCTTAAAAGAAAGTGATGTAATCATCAGTGATTTGCCAGTGGG
CTATTACCCGAATGATGACATAGCAAGACGCTACCAAGTGGCCAGTCCAAAGGAGCACACCTATGCCCATCATTTATTGA
TGGAACAGTCATTGAAATACCTTAAACAAGGTGGCTATGCTCTATTCTTGGTACCAAGTAATTTACTGACAAGCCAGCAA
AGTGATTTGTTAAAAAAATGGTTGACAGATTATGCGCAGGTCATGGCTCTTGTTACTTTGCCTGAAACGCTTTTTGGGCA
TCCTTCAAATGCAAAATCGATTTTAGTTCTCCAAAAGAAAGCTGAAAAAGTGGGTGAAACCTTTGTTTATCCTCTAACTG
ATCTTCAAAATCCAGAAATCATTCGTCATTTCATGACAGAATTTAAAAAGTGGAAACAAGATAATGTTTTTTCATAA
ATGAACTTTGAAAAAATTGAAAAAGCTTACGAGCTAATATTGGAAAATGCCCAATTAATTGAAAATGATTTAAAAACCCA
TATATATGATGCCTTAATCGAGCAAAATTCTTTCTATTTAGGTAGCCCAGGTGCTAGTGACCATGTTGCTAAAAACAATG
AAGCGTTAGCTGCCTTGTCTTTAAGTAAGGAAGAATGGCGGAGAGCCTTTCAGTTTGTCTTCATTAAAGCTGGTCAGACG
GAACAATTACAAGCCAACCATCAGTTTACTCCTGACAGTATTGCCTTTATTCTCTTATTTTTGTTAGAAGAATTGAGTTC
AAATGATACCTTGGATATTCTAGAAATTGGAAGTGGTACTGGAAACTTAGCCCAAACTCTTCTAAACAATAGCAAGAAAT
CATTGGATTATCTAGGGATTGAATTGGATGATTTGTTGATTGATTTATCCGCAAGTATTGCTGAGATTATTGGATCTTCA
GCACGTTTTATTCAAGAAGATGCTGTGCGACCTCAAATCTTAAAAGAAAGTGATGTAATCATCAGTGATTTGCCAGTGGG
CTATTACCCGAATGATGACATAGCAAGACGCTACCAAGTGGCCAGTCCAAAGGAGCACACCTATGCCCATCATTTATTGA
TGGAACAGTCATTGAAATACCTTAAACAAGGTGGCTATGCTCTATTCTTGGTACCAAGTAATTTACTGACAAGCCAGCAA
AGTGATTTGTTAAAAAAATGGTTGACAGATTATGCGCAGGTCATGGCTCTTGTTACTTTGCCTGAAACGCTTTTTGGGCA
TCCTTCAAATGCAAAATCGATTTTAGTTCTCCAAAAGAAAGCTGAAAAAGTGGGTGAAACCTTTGTTTATCCTCTAACTG
ATCTTCAAAATCCAGAAATCATTCGTCATTTCATGACAGAATTTAAAAAGTGGAAACAAGATAATGTTTTTTCATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYH | Streptococcus mutans UA140 |
67.192 |
99.686 |
0.67 |
| comYH | Streptococcus mutans UA159 |
66.877 |
99.686 |
0.667 |