Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   MCCL_RS10900 Genome accession   NC_011999
Coordinates   2090609..2091127 (-) Length   172 a.a.
NCBI ID   WP_041636241.1    Uniprot ID   -
Organism   Macrococcoides caseolyticum JCSC5402     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2085609..2096127
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MCCL_RS10875 (MCCL_1943) - 2086024..2087292 (-) 1269 WP_015912442.1 nucleobase:cation symporter-2 family protein -
  MCCL_RS10880 (MCCL_1944) xpt 2087292..2087876 (-) 585 WP_015912443.1 xanthine phosphoribosyltransferase -
  MCCL_RS11785 (MCCL_1945) - 2088380..2089399 (+) 1020 WP_050742460.1 DUF2382 domain-containing protein -
  MCCL_RS10890 (MCCL_1946) - 2089500..2090114 (+) 615 WP_015912445.1 GNAT family N-acetyltransferase -
  MCCL_RS10895 rpsR 2090334..2090576 (-) 243 WP_041636240.1 30S ribosomal protein S18 -
  MCCL_RS10900 (MCCL_1947) ssbA 2090609..2091127 (-) 519 WP_041636241.1 single-stranded DNA-binding protein Machinery gene
  MCCL_RS10905 rpsF 2091152..2091442 (-) 291 WP_041636544.1 30S ribosomal protein S6 -
  MCCL_RS10910 - 2091579..2091896 (-) 318 WP_041636242.1 hypothetical protein -
  MCCL_RS10915 (MCCL_1948) ychF 2091920..2093020 (-) 1101 WP_015912447.1 redox-regulated ATPase YchF -
  MCCL_RS10920 - 2093053..2093235 (-) 183 WP_041636244.1 DUF951 domain-containing protein -
  MCCL_RS10925 (MCCL_1949) - 2093237..2094124 (-) 888 WP_015912448.1 mechanosensitive ion channel family protein -
  MCCL_RS10930 (MCCL_1950) - 2094125..2094988 (-) 864 WP_015912449.1 ParB/RepB/Spo0J family partition protein -
  MCCL_RS10935 (MCCL_1951) - 2094981..2095742 (-) 762 WP_015912450.1 ParA family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19033.61 Da        Isoelectric Point: 4.8835

>NTDB_id=32901 MCCL_RS10900 WP_041636241.1 2090609..2091127(-) (ssbA) [Macrococcoides caseolyticum JCSC5402]
MLNRVVLVGRLTKDPEYRVTTSGVSVATFTLAVNRTFTNAQGERQADFINCVVFRKQAENVNNFLHKGSLAGVDGRLQSR
SYDNQEGRKVYVTEVVCDSVQFLEPKNTNQSRTNSPSDDYSSYDQGSYGQTQGQNQNYQSSNNQQSNTSAPSNNPFANAT
GPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=32901 MCCL_RS10900 WP_041636241.1 2090609..2091127(-) (ssbA) [Macrococcoides caseolyticum JCSC5402]
TTGCTTAACCGAGTTGTATTAGTTGGTCGTTTAACTAAAGATCCAGAATACAGAGTCACAACATCAGGTGTGTCAGTCGC
TACATTTACTTTAGCAGTAAATAGAACATTTACTAATGCGCAAGGAGAACGTCAGGCTGATTTTATCAACTGTGTCGTAT
TCCGTAAGCAAGCTGAAAATGTTAATAATTTCTTGCATAAAGGTAGTTTAGCTGGGGTTGATGGCAGATTGCAATCACGT
AGTTATGATAATCAAGAAGGACGTAAAGTATATGTTACTGAGGTCGTTTGTGATTCAGTTCAATTCCTTGAACCGAAGAA
CACTAATCAATCTCGTACAAACAGTCCGTCAGATGACTATTCTAGCTATGACCAAGGAAGTTATGGTCAGACACAAGGCC
AGAATCAAAACTATCAGTCATCAAACAATCAACAATCAAATACATCAGCACCATCAAATAACCCATTTGCGAATGCAACA
GGGCCAATTGATATCAGTGATGATGATTTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

62.5

100

0.64
  ssb Latilactobacillus sakei subsp. sakei 23K

53.977

100

0.552
  ssb Vibrio cholerae strain A1552

34.759

100

0.378
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.434

61.628

0.366

Multiple sequence alignment