Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   EHQ66_RS16635 Genome accession   NZ_CP034091
Coordinates   3560102..3560626 (+) Length   174 a.a.
NCBI ID   WP_004249162.1    Uniprot ID   A0A1Z1SRL1
Organism   Proteus mirabilis strain PmBC1123     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3555102..3565626
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EHQ66_RS16630 (EHQ66_16630) uvrA 3557016..3559850 (-) 2835 WP_060556390.1 excinuclease ABC subunit UvrA -
  EHQ66_RS16635 (EHQ66_16635) ssb 3560102..3560626 (+) 525 WP_004249162.1 single-stranded DNA-binding protein SSB1 Machinery gene
  EHQ66_RS16640 (EHQ66_16640) zur 3560968..3561498 (+) 531 WP_060556391.1 zinc uptake transcriptional repressor Zur -
  EHQ66_RS16645 (EHQ66_16645) lexA 3561690..3562301 (-) 612 WP_004245906.1 transcriptional repressor LexA -
  EHQ66_RS16650 (EHQ66_16650) - 3562429..3562800 (-) 372 WP_004245908.1 diacylglycerol kinase -
  EHQ66_RS16655 (EHQ66_16655) plsB 3562931..3565414 (+) 2484 WP_060556392.1 glycerol-3-phosphate 1-O-acyltransferase PlsB -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18830.90 Da        Isoelectric Point: 4.9468

>NTDB_id=328858 EHQ66_RS16635 WP_004249162.1 3560102..3560626(+) (ssb) [Proteus mirabilis strain PmBC1123]
MASRGVNKVILIGNLGQDPEIRYMPSGGAVANLTLATSESWRDKQTGEMKEKTEWHRVVIFGKLAEIAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVNIGGTMQMLGGRGGQDNAPSQGQGGWGQPQQPQASQQFSGGAPSRPAQQPAAAPAP
SNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=328858 EHQ66_RS16635 WP_004249162.1 3560102..3560626(+) (ssb) [Proteus mirabilis strain PmBC1123]
ATGGCGAGCAGAGGCGTTAACAAAGTTATTCTTATCGGTAATTTAGGGCAGGATCCAGAAATCCGTTATATGCCAAGTGG
TGGTGCAGTGGCAAATCTGACACTCGCAACTTCAGAAAGCTGGCGCGACAAACAAACCGGTGAAATGAAAGAGAAAACCG
AATGGCACCGTGTGGTCATTTTCGGCAAACTAGCAGAAATTGCTGGCGAGTATCTGCGTAAAGGTTCACAAGTTTATATT
GAAGGTCAATTACAAACACGTAAATGGCAAGATCAAAGTGGTCAAGATCGCTACAGCACTGAAGTTGTGGTTAATATCGG
TGGCACAATGCAGATGTTAGGTGGCCGTGGTGGTCAAGATAATGCACCTTCACAAGGTCAAGGCGGTTGGGGTCAACCTC
AACAACCACAAGCATCACAACAGTTTAGTGGTGGCGCACCATCTCGCCCAGCACAACAACCGGCAGCAGCACCTGCGCCA
AGTAATGAACCACCAATGGACTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Z1SRL1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

71.892

100

0.764
  ssb Glaesserella parasuis strain SC1401

57.065

100

0.603
  ssb Neisseria meningitidis MC58

48.023

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.023

100

0.489

Multiple sequence alignment