Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | EHQ66_RS13700 | Genome accession | NZ_CP034091 |
| Coordinates | 2918341..2918877 (+) | Length | 178 a.a. |
| NCBI ID | WP_124743650.1 | Uniprot ID | - |
| Organism | Proteus mirabilis strain PmBC1123 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2883665..2925320 | 2918341..2918877 | within | 0 |
Gene organization within MGE regions
Location: 2883665..2925320
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EHQ66_RS13445 (EHQ66_13445) | - | 2883665..2883895 (+) | 231 | WP_124743762.1 | DNA polymerase III subunit theta | - |
| EHQ66_RS13450 (EHQ66_13450) | - | 2883909..2884979 (-) | 1071 | WP_124743763.1 | acyltransferase | - |
| EHQ66_RS19420 | - | 2885074..2887332 (-) | 2259 | WP_241158613.1 | phage head-binding domain-containing protein | - |
| EHQ66_RS13460 (EHQ66_13460) | - | 2887446..2889389 (-) | 1944 | WP_124743764.1 | lytic transglycosylase domain-containing protein | - |
| EHQ66_RS19425 (EHQ66_13465) | - | 2889374..2890942 (-) | 1569 | WP_124743959.1 | phage DNA ejection protein | - |
| EHQ66_RS13470 (EHQ66_13470) | - | 2890952..2891611 (-) | 660 | WP_102086755.1 | DNA transfer protein | - |
| EHQ66_RS13475 (EHQ66_13475) | - | 2891605..2892066 (-) | 462 | WP_124743765.1 | DUF2824 family protein | - |
| EHQ66_RS13480 (EHQ66_13480) | - | 2892066..2892764 (-) | 699 | WP_124743960.1 | phage tail protein | - |
| EHQ66_RS13485 (EHQ66_13485) | - | 2892764..2894545 (-) | 1782 | WP_241158614.1 | packaged DNA stabilization protein | - |
| EHQ66_RS13495 (EHQ66_13495) | - | 2894517..2894999 (-) | 483 | WP_124743766.1 | packaged DNA stabilization gp4 family protein | - |
| EHQ66_RS13500 (EHQ66_13500) | - | 2894980..2895171 (-) | 192 | WP_124743767.1 | hypothetical protein | - |
| EHQ66_RS13505 (EHQ66_13505) | - | 2895225..2896496 (-) | 1272 | WP_124743768.1 | P22 phage major capsid protein family protein | - |
| EHQ66_RS13510 (EHQ66_13510) | - | 2896511..2897410 (-) | 900 | WP_124743769.1 | phage capsid protein | - |
| EHQ66_RS13515 (EHQ66_13515) | - | 2897421..2899622 (-) | 2202 | WP_124743770.1 | portal protein | - |
| EHQ66_RS13520 (EHQ66_13520) | - | 2899625..2901037 (-) | 1413 | WP_124743771.1 | PBSX family phage terminase large subunit | - |
| EHQ66_RS13525 (EHQ66_13525) | - | 2901039..2901461 (-) | 423 | WP_124743772.1 | ubiquitin carboxyl-hydrolase | - |
| EHQ66_RS13530 (EHQ66_13530) | - | 2901517..2901744 (-) | 228 | WP_071233446.1 | DUF2560 family protein | - |
| EHQ66_RS13540 (EHQ66_13540) | - | 2902212..2902592 (-) | 381 | WP_124743774.1 | hypothetical protein | - |
| EHQ66_RS13545 (EHQ66_13545) | - | 2902589..2902981 (-) | 393 | WP_124743775.1 | M15 family metallopeptidase | - |
| EHQ66_RS13550 (EHQ66_13550) | - | 2902974..2903291 (-) | 318 | WP_064497293.1 | phage holin, lambda family | - |
| EHQ66_RS13555 (EHQ66_13555) | - | 2903952..2904455 (-) | 504 | WP_036969493.1 | antiterminator Q family protein | - |
| EHQ66_RS13565 (EHQ66_13565) | - | 2904667..2905287 (-) | 621 | WP_124743776.1 | recombination protein NinG | - |
| EHQ66_RS13570 (EHQ66_13570) | - | 2905561..2905920 (-) | 360 | WP_124743777.1 | hypothetical protein | - |
| EHQ66_RS13575 (EHQ66_13575) | - | 2905941..2906387 (-) | 447 | WP_124743778.1 | recombination protein NinB | - |
| EHQ66_RS13580 (EHQ66_13580) | - | 2906389..2906610 (-) | 222 | WP_241158615.1 | hypothetical protein | - |
| EHQ66_RS13590 (EHQ66_13590) | - | 2906879..2907127 (-) | 249 | WP_124743779.1 | DUF551 domain-containing protein | - |
| EHQ66_RS13595 (EHQ66_13595) | - | 2907114..2907335 (-) | 222 | WP_064497301.1 | hypothetical protein | - |
| EHQ66_RS13600 (EHQ66_13600) | - | 2907335..2907601 (-) | 267 | WP_124743780.1 | hypothetical protein | - |
| EHQ66_RS13605 (EHQ66_13605) | - | 2907633..2907836 (-) | 204 | WP_124743781.1 | hypothetical protein | - |
| EHQ66_RS13610 (EHQ66_13610) | - | 2907837..2908172 (-) | 336 | WP_124743782.1 | hypothetical protein | - |
| EHQ66_RS13615 (EHQ66_13615) | - | 2908196..2909563 (-) | 1368 | WP_124743963.1 | replicative DNA helicase | - |
| EHQ66_RS13620 (EHQ66_13620) | - | 2909567..2910403 (-) | 837 | WP_124743783.1 | replication protein | - |
| EHQ66_RS19080 | - | 2910396..2910572 (-) | 177 | WP_164484703.1 | hypothetical protein | - |
| EHQ66_RS13625 (EHQ66_13625) | - | 2910668..2911009 (-) | 342 | WP_036935825.1 | CII family transcriptional regulator | - |
| EHQ66_RS13630 (EHQ66_13630) | - | 2911141..2911368 (-) | 228 | WP_049216808.1 | helix-turn-helix domain-containing protein | - |
| EHQ66_RS13635 (EHQ66_13635) | - | 2911447..2912124 (+) | 678 | WP_124743964.1 | LexA family transcriptional regulator | - |
| EHQ66_RS13640 (EHQ66_13640) | - | 2912151..2912558 (+) | 408 | WP_071233854.1 | hypothetical protein | - |
| EHQ66_RS13645 (EHQ66_13645) | - | 2913174..2913368 (+) | 195 | WP_241158616.1 | hypothetical protein | - |
| EHQ66_RS13650 (EHQ66_13650) | - | 2913379..2913564 (+) | 186 | WP_124743656.1 | hypothetical protein | - |
| EHQ66_RS19085 | - | 2913624..2913791 (+) | 168 | WP_159290196.1 | hypothetical protein | - |
| EHQ66_RS13655 (EHQ66_13655) | - | 2913816..2914004 (+) | 189 | WP_109395762.1 | hypothetical protein | - |
| EHQ66_RS19090 | - | 2914021..2914167 (+) | 147 | WP_164484797.1 | hypothetical protein | - |
| EHQ66_RS19535 | - | 2914391..2914513 (+) | 123 | WP_261190402.1 | hypothetical protein | - |
| EHQ66_RS13665 (EHQ66_13665) | - | 2914641..2914919 (+) | 279 | WP_124743654.1 | hypothetical protein | - |
| EHQ66_RS13670 (EHQ66_13670) | - | 2914982..2915551 (+) | 570 | WP_124743653.1 | hypothetical protein | - |
| EHQ66_RS13675 (EHQ66_13675) | - | 2915772..2916047 (+) | 276 | WP_063693270.1 | hypothetical protein | - |
| EHQ66_RS13680 (EHQ66_13680) | - | 2916062..2916510 (+) | 449 | Protein_2625 | SAM-dependent methyltransferase | - |
| EHQ66_RS13685 (EHQ66_13685) | - | 2916558..2916761 (+) | 204 | WP_063108486.1 | hypothetical protein | - |
| EHQ66_RS13690 (EHQ66_13690) | - | 2916758..2917339 (+) | 582 | Protein_2627 | RecT family recombinase | - |
| EHQ66_RS19540 | - | 2917520..2917645 (+) | 126 | WP_277424526.1 | hypothetical protein | - |
| EHQ66_RS13695 (EHQ66_13695) | - | 2917658..2918351 (+) | 694 | Protein_2629 | lambda exonuclease family protein | - |
| EHQ66_RS13700 (EHQ66_13700) | ssb | 2918341..2918877 (+) | 537 | WP_124743650.1 | single-stranded DNA-binding protein | Machinery gene |
| EHQ66_RS13705 (EHQ66_13705) | - | 2918893..2919180 (+) | 288 | WP_124743649.1 | hypothetical protein | - |
| EHQ66_RS13710 (EHQ66_13710) | - | 2919200..2919439 (+) | 240 | WP_071425894.1 | hypothetical protein | - |
| EHQ66_RS13715 (EHQ66_13715) | - | 2919479..2919772 (+) | 294 | WP_124743648.1 | hypothetical protein | - |
| EHQ66_RS13720 (EHQ66_13720) | - | 2919865..2920371 (+) | 507 | WP_124743647.1 | hypothetical protein | - |
| EHQ66_RS13725 (EHQ66_13725) | - | 2920590..2920802 (+) | 213 | WP_124743646.1 | hypothetical protein | - |
| EHQ66_RS13735 (EHQ66_13735) | - | 2921108..2921710 (+) | 603 | WP_124743786.1 | MT-A70 family methyltransferase | - |
| EHQ66_RS13745 (EHQ66_13745) | - | 2922146..2923303 (+) | 1158 | WP_063073711.1 | site-specific integrase | - |
| EHQ66_RS13755 (EHQ66_13755) | folD | 2923592..2924464 (+) | 873 | WP_060554830.1 | bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD | - |
| EHQ66_RS13760 (EHQ66_13760) | ybcJ | 2924468..2924680 (+) | 213 | WP_060556405.1 | ribosome-associated protein YbcJ | - |
Sequence
Protein
Download Length: 178 a.a. Molecular weight: 19575.98 Da Isoelectric Point: 6.7213
>NTDB_id=328854 EHQ66_RS13700 WP_124743650.1 2918341..2918877(+) (ssb) [Proteus mirabilis strain PmBC1123]
MASKGVNKCILIGHLGQDPEIRYMPSGGAVANLTLATSESWRDKQTGEMKEKTEWHRVVIFGKLAETAGEYLRKGSQVYI
EGSLQTRKWTDQSGQDRYTTEVVVNIGGTMQMLGGNGGNQAGSQKPQNQGWGQPQQPQAPKQVSSNQAPQSEPTMDFDDD
IPFAPIVLPYPRHAIYVI
MASKGVNKCILIGHLGQDPEIRYMPSGGAVANLTLATSESWRDKQTGEMKEKTEWHRVVIFGKLAETAGEYLRKGSQVYI
EGSLQTRKWTDQSGQDRYTTEVVVNIGGTMQMLGGNGGNQAGSQKPQNQGWGQPQQPQAPKQVSSNQAPQSEPTMDFDDD
IPFAPIVLPYPRHAIYVI
Nucleotide
Download Length: 537 bp
>NTDB_id=328854 EHQ66_RS13700 WP_124743650.1 2918341..2918877(+) (ssb) [Proteus mirabilis strain PmBC1123]
ATGGCAAGTAAAGGCGTGAATAAATGTATTCTCATTGGTCACTTGGGTCAGGATCCGGAAATCCGCTATATGCCATCAGG
TGGCGCAGTAGCAAATCTCACACTAGCCACATCGGAATCGTGGCGCGATAAGCAGACTGGTGAGATGAAGGAGAAAACCG
AGTGGCATCGCGTGGTAATTTTCGGCAAATTAGCCGAAACTGCAGGTGAATATCTGAGAAAAGGAAGTCAGGTATACATA
GAAGGTTCTCTGCAAACCAGAAAATGGACAGACCAAAGCGGTCAAGACAGATACACAACGGAAGTGGTGGTTAATATCGG
CGGTACGATGCAAATGCTAGGCGGTAACGGTGGTAATCAGGCAGGAAGCCAGAAGCCACAAAACCAAGGATGGGGCCAAC
CTCAGCAACCGCAAGCACCAAAACAAGTATCGAGCAATCAAGCACCACAAAGTGAACCTACGATGGATTTCGATGATGAC
ATCCCCTTCGCCCCTATCGTACTCCCCTACCCACGCCACGCTATTTATGTGATTTAA
ATGGCAAGTAAAGGCGTGAATAAATGTATTCTCATTGGTCACTTGGGTCAGGATCCGGAAATCCGCTATATGCCATCAGG
TGGCGCAGTAGCAAATCTCACACTAGCCACATCGGAATCGTGGCGCGATAAGCAGACTGGTGAGATGAAGGAGAAAACCG
AGTGGCATCGCGTGGTAATTTTCGGCAAATTAGCCGAAACTGCAGGTGAATATCTGAGAAAAGGAAGTCAGGTATACATA
GAAGGTTCTCTGCAAACCAGAAAATGGACAGACCAAAGCGGTCAAGACAGATACACAACGGAAGTGGTGGTTAATATCGG
CGGTACGATGCAAATGCTAGGCGGTAACGGTGGTAATCAGGCAGGAAGCCAGAAGCCACAAAACCAAGGATGGGGCCAAC
CTCAGCAACCGCAAGCACCAAAACAAGTATCGAGCAATCAAGCACCACAAAGTGAACCTACGATGGATTTCGATGATGAC
ATCCCCTTCGCCCCTATCGTACTCCCCTACCCACGCCACGCTATTTATGTGATTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
70.056 |
99.438 |
0.697 |
| ssb | Glaesserella parasuis strain SC1401 |
52.128 |
100 |
0.551 |
| ssb | Neisseria gonorrhoeae MS11 |
43.258 |
100 |
0.433 |
| ssb | Neisseria meningitidis MC58 |
43.258 |
100 |
0.433 |