Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | N032_RS23785 | Genome accession | NZ_CP034078 |
| Coordinates | 5179784..5180350 (-) | Length | 188 a.a. |
| NCBI ID | WP_003317093.1 | Uniprot ID | A0A0P9GWC5 |
| Organism | Pseudomonas syringae pv. pisi str. PP1 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 5174784..5185350
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N032_RS23760 (N032_23760) | - | 5175038..5175931 (+) | 894 | WP_024648005.1 | ABC transporter permease subunit | - |
| N032_RS23765 (N032_23765) | ugpC | 5175928..5177034 (+) | 1107 | WP_004394159.1 | sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC | - |
| N032_RS23770 (N032_23770) | - | 5177041..5177802 (+) | 762 | WP_003317090.1 | glycerophosphoryl diester phosphodiesterase | - |
| N032_RS23775 (N032_23775) | - | 5177799..5178542 (+) | 744 | WP_003317091.1 | inositol monophosphatase family protein | - |
| N032_RS23780 (N032_23780) | - | 5178542..5179654 (+) | 1113 | WP_024648004.1 | endo-1,4-beta-xylanase | - |
| N032_RS23785 (N032_23785) | ssb | 5179784..5180350 (-) | 567 | WP_003317093.1 | single-stranded DNA-binding protein | Machinery gene |
| N032_RS23790 (N032_23790) | - | 5180360..5181754 (-) | 1395 | WP_003426593.1 | MFS transporter | - |
| N032_RS23795 (N032_23795) | uvrA | 5181884..5184718 (+) | 2835 | WP_003317094.1 | excinuclease ABC subunit UvrA | - |
| N032_RS23800 (N032_23800) | bfr | 5184813..5185277 (-) | 465 | WP_003317095.1 | bacterioferritin | - |
Sequence
Protein
Download Length: 188 a.a. Molecular weight: 20917.05 Da Isoelectric Point: 5.9404
>NTDB_id=328782 N032_RS23785 WP_003317093.1 5179784..5180350(-) (ssb) [Pseudomonas syringae pv. pisi str. PP1]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQGDAQQGQGGGNYNQSAPRPQQSRPQQSAPQQSAPQQNYNQQPPQ
QRDSRPAPQQQAPQPAADFDSFDDDIPF
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQGDAQQGQGGGNYNQSAPRPQQSRPQQSAPQQSAPQQNYNQQPPQ
QRDSRPAPQQQAPQPAADFDSFDDDIPF
Nucleotide
Download Length: 567 bp
>NTDB_id=328782 N032_RS23785 WP_003317093.1 5179784..5180350(-) (ssb) [Pseudomonas syringae pv. pisi str. PP1]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACATGCGGCCAGGATCCCGAAGTTCGCTACTTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCAACCAGCGAACAGTGGACTGACAAGCAGTCCGGTCAGAAAGTCGAAAAGACCGAAT
GGCACCGTGTATCGATGTTCGGCAAGGTCGCCGAAATCGCCGGCGAATACCTGCGCAAGGGTTCGCAGGTGTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGCTACACCACTGAAATCGTCGTCGACATGCAGGGCAC
CATGCAACTGCTGGGCGGCCGTCCGCAGGGCGACGCTCAACAAGGTCAGGGCGGCGGCAACTACAACCAGTCCGCACCGC
GTCCACAGCAGTCGCGCCCACAACAGTCGGCGCCGCAGCAATCTGCACCTCAGCAGAACTACAACCAGCAGCCGCCACAA
CAGCGCGACTCGCGCCCAGCGCCGCAACAACAAGCGCCGCAGCCAGCTGCTGACTTTGATAGCTTTGATGATGATATTCC
GTTCTGA
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACATGCGGCCAGGATCCCGAAGTTCGCTACTTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCAACCAGCGAACAGTGGACTGACAAGCAGTCCGGTCAGAAAGTCGAAAAGACCGAAT
GGCACCGTGTATCGATGTTCGGCAAGGTCGCCGAAATCGCCGGCGAATACCTGCGCAAGGGTTCGCAGGTGTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGCTACACCACTGAAATCGTCGTCGACATGCAGGGCAC
CATGCAACTGCTGGGCGGCCGTCCGCAGGGCGACGCTCAACAAGGTCAGGGCGGCGGCAACTACAACCAGTCCGCACCGC
GTCCACAGCAGTCGCGCCCACAACAGTCGGCGCCGCAGCAATCTGCACCTCAGCAGAACTACAACCAGCAGCCGCCACAA
CAGCGCGACTCGCGCCCAGCGCCGCAACAACAAGCGCCGCAGCCAGCTGCTGACTTTGATAGCTTTGATGATGATATTCC
GTTCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
55.208 |
100 |
0.564 |
| ssb | Glaesserella parasuis strain SC1401 |
47.09 |
100 |
0.473 |
| ssb | Neisseria meningitidis MC58 |
44.92 |
99.468 |
0.447 |
| ssb | Neisseria gonorrhoeae MS11 |
44.92 |
99.468 |
0.447 |