Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   N032_RS08975 Genome accession   NZ_CP034078
Coordinates   1867719..1869935 (+) Length   738 a.a.
NCBI ID   WP_024648608.1    Uniprot ID   -
Organism   Pseudomonas syringae pv. pisi str. PP1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1862719..1874935
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N032_RS08960 (N032_08960) - 1865058..1865681 (+) 624 WP_024648609.1 glutathione S-transferase -
  N032_RS08965 (N032_08965) - 1865865..1866797 (+) 933 WP_011267141.1 ABC transporter ATP-binding protein -
  N032_RS08970 (N032_08970) - 1866794..1867582 (+) 789 WP_003421319.1 ABC transporter permease -
  N032_RS08975 (N032_08975) comA 1867719..1869935 (+) 2217 WP_024648608.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  N032_RS08980 (N032_08980) exbB 1869978..1870694 (+) 717 WP_003317467.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  N032_RS08985 (N032_08985) - 1870691..1871122 (+) 432 WP_024648607.1 biopolymer transporter ExbD -
  N032_RS08990 (N032_08990) lpxK 1871122..1872117 (+) 996 WP_024648606.1 tetraacyldisaccharide 4'-kinase -
  N032_RS08995 (N032_08995) - 1872135..1872320 (+) 186 WP_002552679.1 Trm112 family protein -
  N032_RS09000 (N032_09000) kdsB 1872317..1873081 (+) 765 WP_003317470.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  N032_RS09005 (N032_09005) murB 1873116..1874135 (+) 1020 WP_024648605.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 738 a.a.        Molecular weight: 80345.64 Da        Isoelectric Point: 10.6635

>NTDB_id=328774 N032_RS08975 WP_024648608.1 1867719..1869935(+) (comA) [Pseudomonas syringae pv. pisi str. PP1]
MRTGMIALALGLLALRFLPALPPTWLLLMMPILALMLLPFRTYPLALFLLGFTWACVSAQWALSDRLAPRLDGQTLWVQG
KVVGLPSVAEGVVRFELEGAWSRRAKLPARIRVAWYGGQPVNSGERWRMAVKLKRPSGLVNPDAFDYEAWLLAQRIGATG
TVVDGQLLAPARAAWRDAIRQRLLAVDAQGREGGLAALVLGDGSGLSSTDWQVLQDTGTVHLLVISGQHIGLLAGVIYAL
VAGLARWGLWPRSLPWLPWACALAFSAALGYGLLAGFEVPVRRACVMVAMVLLWRLRFRHLGVVWPLLLSFNAVLIFEPL
VTLQPGFWLSFAAVGILILIFSGRLGAWRWWQSWTRAQWLIAVGLLPILLALNLPISLSGPFANLLAVPWVSVIVLPPAL
LGTLLLPVPVVGEGLLWLAGGALQWLFVFLDAVAAALPAWLPSAVPIWAWWLSLLGALLLLLPKGVPMRPLGWPLLLLCV
FPPLESVPEGQVDVLQLDVGQGLAILLRTRNHTLLYDAGPRFGEFDIGQRVVVPAMRKAGVRHLDLMLISHSDADHAGGA
AAVHQAFPVSRVLGGELARLAPQLGARLCESGARWEWDGVVFSTWRWEQGPNGNPASCILSVDARGERLLLAGDIDVSAE
RAAIDSGFDLRAHWLQSPHHGSRTSSSKAFLRAVAPVGVLISRGRNNAFGHPHPLVMARYRGLGIASYDSAELGAVRLQL
GTFGTPQAERAQRRFWRD

Nucleotide


Download         Length: 2217 bp        

>NTDB_id=328774 N032_RS08975 WP_024648608.1 1867719..1869935(+) (comA) [Pseudomonas syringae pv. pisi str. PP1]
ATGCGCACAGGGATGATCGCGCTCGCGCTCGGGCTGCTTGCCCTGCGTTTTCTACCGGCGCTGCCGCCGACCTGGCTATT
GCTGATGATGCCGATACTGGCGTTGATGCTGCTGCCGTTTCGCACCTATCCACTGGCGCTGTTCCTGCTCGGCTTCACGT
GGGCGTGCGTGTCGGCGCAGTGGGCGCTGAGTGACCGGTTGGCGCCGCGTCTCGATGGTCAGACGCTGTGGGTACAGGGC
AAGGTGGTCGGTTTGCCGAGTGTCGCCGAAGGTGTGGTGCGTTTCGAGCTGGAAGGCGCCTGGTCACGACGCGCCAAGTT
GCCCGCACGAATCCGGGTGGCCTGGTACGGCGGCCAGCCGGTGAACAGCGGCGAGCGCTGGCGCATGGCGGTCAAACTCA
AGCGACCGTCCGGGCTGGTCAATCCCGATGCTTTCGACTATGAGGCCTGGCTGCTGGCGCAGCGCATCGGTGCGACTGGC
ACGGTGGTGGATGGTCAGCTATTGGCACCCGCGCGTGCCGCCTGGCGCGATGCGATTCGTCAGCGCCTGCTGGCGGTCGA
TGCGCAGGGCCGGGAGGGCGGTCTGGCAGCGCTGGTGCTGGGCGATGGCTCAGGATTATCGAGTACCGACTGGCAGGTGT
TGCAGGATACCGGCACTGTGCACCTGCTGGTCATTTCCGGCCAGCACATCGGTTTGCTGGCCGGGGTGATTTACGCTTTG
GTCGCAGGCCTGGCGCGCTGGGGGCTGTGGCCACGCTCTTTGCCCTGGCTGCCGTGGGCGTGTGCACTGGCGTTCAGCGC
TGCACTGGGCTATGGACTGCTGGCCGGTTTCGAGGTGCCAGTCCGGCGCGCCTGCGTGATGGTCGCGATGGTGCTGCTGT
GGCGCTTGCGTTTTCGGCACCTGGGCGTGGTCTGGCCGTTGTTGCTGTCCTTCAACGCGGTGCTGATCTTCGAGCCGCTG
GTGACGCTGCAGCCGGGTTTCTGGCTGTCCTTCGCGGCGGTCGGCATTCTGATCCTGATTTTCAGCGGGCGTCTCGGCGC
CTGGCGCTGGTGGCAGAGCTGGACACGGGCGCAATGGCTGATCGCCGTCGGCTTGTTGCCGATTCTGCTGGCGCTGAACT
TGCCGATCAGCCTCAGCGGCCCGTTTGCCAACTTGCTTGCCGTGCCTTGGGTCAGCGTGATCGTCCTGCCTCCGGCATTG
CTCGGAACACTGTTGCTGCCAGTCCCTGTGGTCGGGGAAGGTCTGCTGTGGCTAGCGGGCGGGGCGCTGCAGTGGCTGTT
CGTGTTCCTCGACGCGGTGGCTGCCGCATTGCCGGCCTGGTTGCCCAGTGCGGTGCCAATCTGGGCATGGTGGTTGAGTT
TGCTCGGGGCGTTACTCTTGTTGCTGCCCAAGGGCGTGCCCATGCGTCCGCTGGGCTGGCCGTTGCTGTTGCTGTGCGTT
TTTCCGCCGCTCGAATCAGTGCCTGAAGGCCAGGTAGACGTGTTGCAACTGGATGTGGGGCAGGGCCTGGCGATTCTCCT
GCGCACCCGCAATCACACACTTCTGTATGACGCAGGTCCGCGTTTCGGTGAGTTCGATATCGGTCAGCGCGTGGTCGTAC
CCGCCATGCGCAAGGCAGGTGTCCGCCACCTTGACCTGATGTTGATCAGCCATTCCGACGCAGACCATGCCGGCGGTGCG
GCGGCGGTTCATCAGGCCTTTCCGGTGAGCCGGGTGCTGGGTGGCGAGCTGGCCAGACTCGCCCCGCAACTCGGCGCCCG
ATTGTGCGAGAGCGGTGCGCGCTGGGAGTGGGATGGCGTGGTGTTTTCCACGTGGCGCTGGGAGCAGGGGCCTAATGGCA
ATCCAGCCTCCTGCATCCTCAGCGTCGACGCCAGGGGCGAGCGTCTGCTGCTGGCGGGCGATATCGACGTGAGCGCCGAG
CGCGCAGCGATCGACAGCGGGTTCGACCTGCGTGCTCATTGGTTGCAGTCGCCACATCATGGCAGCCGCACCTCGTCGTC
CAAAGCGTTTCTGCGCGCCGTGGCACCGGTTGGTGTGCTGATTTCCCGTGGTCGCAACAACGCGTTCGGTCACCCGCATC
CGTTGGTCATGGCGCGCTATCGAGGCCTGGGCATCGCCAGTTACGACAGTGCCGAGCTGGGCGCCGTGCGTCTGCAACTG
GGCACGTTCGGAACGCCACAGGCCGAGCGTGCGCAACGGCGCTTTTGGCGTGATTGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-464)

Domain of unknown function (DUF4131) (DUF4131)

(21-166)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-676)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

62.011

97.019

0.602
  comA Ralstonia pseudosolanacearum GMI1000

35.231

100

0.402

Multiple sequence alignment