Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   N032_RS08980 Genome accession   NZ_CP034078
Coordinates   1869978..1870694 (+) Length   238 a.a.
NCBI ID   WP_003317467.1    Uniprot ID   -
Organism   Pseudomonas syringae pv. pisi str. PP1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1864978..1875694
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N032_RS08960 (N032_08960) - 1865058..1865681 (+) 624 WP_024648609.1 glutathione S-transferase -
  N032_RS08965 (N032_08965) - 1865865..1866797 (+) 933 WP_011267141.1 ABC transporter ATP-binding protein -
  N032_RS08970 (N032_08970) - 1866794..1867582 (+) 789 WP_003421319.1 ABC transporter permease -
  N032_RS08975 (N032_08975) comA 1867719..1869935 (+) 2217 WP_024648608.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  N032_RS08980 (N032_08980) exbB 1869978..1870694 (+) 717 WP_003317467.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  N032_RS08985 (N032_08985) - 1870691..1871122 (+) 432 WP_024648607.1 biopolymer transporter ExbD -
  N032_RS08990 (N032_08990) lpxK 1871122..1872117 (+) 996 WP_024648606.1 tetraacyldisaccharide 4'-kinase -
  N032_RS08995 (N032_08995) - 1872135..1872320 (+) 186 WP_002552679.1 Trm112 family protein -
  N032_RS09000 (N032_09000) kdsB 1872317..1873081 (+) 765 WP_003317470.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  N032_RS09005 (N032_09005) murB 1873116..1874135 (+) 1020 WP_024648605.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 25804.35 Da        Isoelectric Point: 7.9113

>NTDB_id=328775 N032_RS08980 WP_003317467.1 1869978..1870694(+) (exbB) [Pseudomonas syringae pv. pisi str. PP1]
MVEWRQFFEGVITVWELVKSGGWMMLPIILSSIAAAGIIIERLWTLRASRITPPHLLGQVWQWIQEKKLDGEKLKQLRAD
SPLGEILAAGLANSRHGREIMKECIEEAAARVIHELERYLSALGSIAAMAPLLGLLGTVLGMIDIFGSFNSSGATANAGV
LAGGISKALICTASGLIVAIPAIFFHRFLQSRVDELVVGMEQQAIRLVEVVQGDRDVDLIDAKIDLKSLARAGGGKKK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=328775 N032_RS08980 WP_003317467.1 1869978..1870694(+) (exbB) [Pseudomonas syringae pv. pisi str. PP1]
ATGGTAGAGTGGCGCCAATTTTTCGAGGGAGTGATCACTGTGTGGGAACTGGTCAAATCTGGCGGCTGGATGATGCTGCC
GATTATTCTGAGCTCCATCGCCGCCGCCGGCATCATCATCGAGCGCCTGTGGACGTTGCGTGCCAGCCGTATCACGCCAC
CGCACCTGCTCGGGCAGGTCTGGCAGTGGATTCAGGAAAAGAAGCTGGACGGCGAAAAACTCAAGCAGCTGCGCGCTGAC
TCGCCGCTGGGCGAAATCCTTGCCGCAGGTCTGGCCAATTCCAGGCATGGTCGCGAGATCATGAAGGAGTGCATCGAAGA
AGCCGCTGCCCGGGTCATTCATGAGCTGGAGCGCTATCTCAGCGCACTGGGCTCGATCGCTGCCATGGCGCCGCTGCTTG
GTTTGCTGGGCACCGTGCTGGGCATGATCGATATCTTCGGCTCGTTCAACAGTTCCGGGGCCACCGCCAACGCCGGCGTG
CTGGCAGGTGGTATTTCCAAGGCGCTGATCTGTACGGCGTCGGGTCTTATCGTCGCGATCCCGGCGATTTTCTTTCATCG
CTTCCTGCAGAGCCGCGTCGATGAGTTGGTGGTCGGCATGGAACAACAGGCCATTCGTCTGGTTGAAGTGGTGCAGGGCG
ACCGCGATGTCGATCTGATCGACGCCAAGATCGATCTCAAGTCGCTGGCCAGAGCGGGCGGGGGCAAGAAGAAGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(79-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

78.571

88.235

0.693

Multiple sequence alignment