Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   N032_RS04020 Genome accession   NZ_CP034078
Coordinates   855229..856566 (-) Length   445 a.a.
NCBI ID   WP_024648767.1    Uniprot ID   -
Organism   Pseudomonas syringae pv. pisi str. PP1     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 850229..861566
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N032_RS04005 (N032_04005) - 850357..853560 (+) 3204 WP_024648770.1 PilC/PilY family type IV pilus protein -
  N032_RS04010 (N032_04010) - 853572..853973 (+) 402 WP_024648769.1 type IV pilin protein -
  N032_RS04015 (N032_04015) thiO 853999..855102 (+) 1104 WP_024648768.1 glycine oxidase ThiO -
  N032_RS04020 (N032_04020) pilR 855229..856566 (-) 1338 WP_024648767.1 sigma-54 dependent transcriptional regulator Regulator
  N032_RS04025 (N032_04025) pilS 856569..858161 (-) 1593 WP_024648766.1 ATP-binding protein Regulator
  N032_RS04030 (N032_04030) - 858151..858390 (-) 240 WP_032607804.1 PP0621 family protein -
  N032_RS04035 (N032_04035) - 858511..859533 (-) 1023 WP_003344571.1 outer membrane protein assembly factor BamD -
  N032_RS04040 (N032_04040) rluD 859683..860645 (+) 963 WP_002551999.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  N032_RS04045 (N032_04045) pgeF 860642..861370 (+) 729 WP_024648765.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 445 a.a.        Molecular weight: 49628.55 Da        Isoelectric Point: 6.2986

>NTDB_id=328763 N032_RS04020 WP_024648767.1 855229..856566(-) (pilR) [Pseudomonas syringae pv. pisi str. PP1]
MSQRQKILIVDDEPDIRELLEITLGRMKLDTRSARNVAEAHDWLAREPFDMCLTDMRLPDGNGLELVQHIQHGYPHVPVA
MITAHGNVDTAINALKAGAFDFVTKPVDLGRLRELVNSALSLPGAPPTRSIDNRLLGDSLAMRTLRNQIGKLARSQAPIY
ISGESGSGKELVARLIHEQGPRIDKPFIPVNCGAIPSELMESEFFGHRKGSFSGAHEDKPGLFQAAHTGTLFLDEVADLP
LAMQVKLLRAIQEKSIRSVGGQQEQIVDVRILCATHKNLNAEVAAGRFRQDLYYRLSVIEVRVPSLRERREDIDQLAGSV
LKRLAGNGAQPVARLNAQALETLKSYRFPGNVRELENMLERAYTLCENDEIHASDLRLTESASPQESDGPSLADIDNLED
YLESVERQLILQALEETRWNRTAAAERLSLSFRSLRYRLKKLGLD

Nucleotide


Download         Length: 1338 bp        

>NTDB_id=328763 N032_RS04020 WP_024648767.1 855229..856566(-) (pilR) [Pseudomonas syringae pv. pisi str. PP1]
ATGAGCCAAAGGCAAAAAATCCTGATAGTCGATGATGAGCCGGATATTCGCGAACTCCTGGAGATCACGCTGGGACGCAT
GAAACTCGACACGCGCAGCGCCCGCAACGTTGCCGAAGCCCACGACTGGCTGGCCCGCGAGCCGTTCGACATGTGCCTGA
CCGACATGCGTCTGCCTGATGGTAATGGCCTTGAGCTGGTGCAACACATACAGCACGGCTACCCCCACGTGCCGGTGGCG
ATGATCACTGCCCACGGCAATGTGGATACCGCGATCAACGCGCTGAAGGCCGGGGCTTTCGACTTTGTGACCAAGCCGGT
CGACCTCGGCAGGTTGCGCGAGCTGGTCAATAGCGCGCTGAGCCTGCCCGGCGCACCACCCACGCGAAGCATCGACAACC
GCCTGCTGGGCGACTCTCTGGCAATGCGTACCTTGCGCAATCAGATCGGCAAGCTGGCCCGCAGCCAGGCGCCGATCTAC
ATCAGCGGCGAGTCAGGCAGCGGCAAGGAGCTTGTAGCGAGGCTGATCCACGAGCAGGGCCCGCGCATCGACAAGCCGTT
CATACCGGTGAATTGCGGTGCCATCCCTTCCGAACTGATGGAGAGCGAATTCTTCGGCCATCGCAAAGGCAGTTTCAGCG
GTGCCCACGAAGACAAGCCCGGTCTGTTTCAGGCGGCGCACACCGGCACGCTGTTTCTCGATGAGGTCGCCGACCTGCCG
CTGGCCATGCAGGTCAAACTGCTGCGCGCTATCCAGGAAAAATCCATTCGCAGCGTCGGCGGCCAGCAAGAGCAGATCGT
CGACGTGCGCATTCTGTGCGCCACCCACAAGAACCTGAATGCGGAGGTCGCGGCAGGTCGGTTCCGTCAGGATCTGTATT
ACCGATTGAGCGTGATCGAAGTGCGCGTGCCCTCATTGCGCGAGCGGCGTGAGGATATCGACCAACTGGCGGGCAGCGTG
CTCAAGCGCCTTGCCGGGAACGGCGCACAACCCGTCGCGCGCCTGAACGCGCAGGCGCTGGAAACGCTGAAGAGCTACCG
CTTCCCCGGTAACGTGCGCGAACTGGAAAACATGCTGGAGCGCGCTTACACGCTGTGCGAGAACGACGAAATCCACGCCA
GCGACCTGCGCCTGACAGAGTCCGCCAGCCCTCAGGAGAGCGATGGCCCGAGCTTGGCCGACATCGACAACCTTGAAGAC
TACCTGGAAAGCGTCGAACGCCAGCTCATTCTGCAGGCGCTGGAAGAAACCCGCTGGAACCGCACCGCTGCAGCAGAAAG
GCTCAGTTTGTCGTTCAGGTCACTGCGCTATCGCCTGAAGAAGCTGGGCCTGGATTGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(136-301)

Bacterial regulatory protein, Fis family (HTH_8)

(402-442)

Response regulator receiver domain (Response_reg)

(7-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

76.975

99.551

0.766
  pilR Acinetobacter baumannii strain A118

48.608

100

0.51
  luxO Vibrio cholerae strain A1552

37.613

99.775

0.375

Multiple sequence alignment