Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   N032_RS04025 Genome accession   NZ_CP034078
Coordinates   856569..858161 (-) Length   530 a.a.
NCBI ID   WP_024648766.1    Uniprot ID   -
Organism   Pseudomonas syringae pv. pisi str. PP1     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 851569..863161
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N032_RS04010 (N032_04010) - 853572..853973 (+) 402 WP_024648769.1 type IV pilin protein -
  N032_RS04015 (N032_04015) thiO 853999..855102 (+) 1104 WP_024648768.1 glycine oxidase ThiO -
  N032_RS04020 (N032_04020) pilR 855229..856566 (-) 1338 WP_024648767.1 sigma-54 dependent transcriptional regulator Regulator
  N032_RS04025 (N032_04025) pilS 856569..858161 (-) 1593 WP_024648766.1 ATP-binding protein Regulator
  N032_RS04030 (N032_04030) - 858151..858390 (-) 240 WP_032607804.1 PP0621 family protein -
  N032_RS04035 (N032_04035) - 858511..859533 (-) 1023 WP_003344571.1 outer membrane protein assembly factor BamD -
  N032_RS04040 (N032_04040) rluD 859683..860645 (+) 963 WP_002551999.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  N032_RS04045 (N032_04045) pgeF 860642..861370 (+) 729 WP_024648765.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 530 a.a.        Molecular weight: 58075.05 Da        Isoelectric Point: 6.8620

>NTDB_id=328764 N032_RS04025 WP_024648766.1 856569..858161(-) (pilS) [Pseudomonas syringae pv. pisi str. PP1]
MTADSPSLVSPQAQRILRLYHLYRLTIGVVLVLLISSSLETELLQLANPNLFRSGCWLYLVFNILVVVLLERPSRQAQFF
GLAMTDAIMLSALFYAAGGPSSGIGNLLIASVAISNVLLRGRIGLLIAAVSAIGIIYLTFYISFGTPSVSNDYVQAGSLG
ALCFAAALLVQALTARMQVSEVLAEQRAADVDSLEALNALILQRMRTGILVLDANHQVLLANQSALHLLSQEQLVGQMID
TCSPQLVERLRQWLVNPIMVPRSITTAPVGLVLQPSFATLNRGDQRQTLVFLEDLSQIAHQAQQLKLAALGRLTAGIAHE
IRNPLGAVSHAAQLLNESEELSAADRRLGQIIHEQSGRIDRVIENVLQLSRRREAQPELLDLKTWLEHFVAEFRSSTAPN
QAIHVDISPGTLTTRMDSGQLTQIMTNLVQNGLRYSGKNHPLAQVWLKLHNEPRSDLPTLEVLDDGPGVSEQHLSKMFEP
FFTTESKGTGLGLYLSRELCESNQAHLEYAPRPTGGSCLRITFAHPFKTS

Nucleotide


Download         Length: 1593 bp        

>NTDB_id=328764 N032_RS04025 WP_024648766.1 856569..858161(-) (pilS) [Pseudomonas syringae pv. pisi str. PP1]
GTGACCGCTGATTCACCGTCCCTTGTCAGCCCGCAGGCACAGCGGATTCTGCGGCTGTACCACCTTTATCGACTGACCAT
CGGCGTCGTACTGGTGCTGTTGATTTCCAGCAGCCTGGAAACCGAGCTGCTGCAACTGGCCAACCCGAACCTGTTCCGCT
CGGGCTGCTGGTTGTATCTGGTGTTCAACATTCTGGTCGTCGTGCTGCTGGAACGCCCCAGCCGTCAGGCACAGTTTTTC
GGCCTGGCGATGACCGACGCGATCATGCTCTCCGCGCTGTTCTACGCAGCCGGCGGGCCTTCCAGCGGTATCGGCAACCT
GTTGATTGCCTCGGTAGCGATCAGCAACGTTTTGCTGCGCGGCCGTATCGGCTTGTTGATCGCTGCGGTTTCGGCCATCG
GCATCATCTACCTGACGTTCTACATCAGCTTCGGCACACCCTCGGTTTCCAACGACTACGTGCAGGCTGGCTCGCTGGGC
GCCTTGTGCTTCGCCGCCGCCCTGCTGGTGCAGGCGCTGACAGCGCGCATGCAGGTCAGCGAGGTACTGGCCGAACAGCG
CGCGGCGGATGTCGACAGCCTCGAGGCACTCAACGCACTCATTTTGCAGCGCATGCGTACCGGCATTCTGGTGCTGGATG
CCAATCACCAGGTGCTGCTGGCCAACCAGAGTGCCTTGCACCTGCTGAGCCAGGAGCAACTGGTCGGCCAGATGATCGAC
ACCTGCTCGCCGCAGCTGGTCGAACGCCTGCGCCAGTGGCTCGTCAATCCGATCATGGTGCCGCGCAGTATCACCACCGC
CCCCGTCGGGCTGGTACTGCAACCGAGCTTTGCCACACTCAACCGTGGCGATCAGCGTCAGACGCTGGTTTTTCTCGAAG
ACCTGTCGCAGATCGCCCACCAGGCGCAGCAGCTCAAGCTCGCCGCACTGGGACGCCTGACCGCCGGGATTGCCCATGAG
ATACGCAACCCGCTGGGCGCCGTCAGTCATGCGGCTCAACTGCTTAATGAATCGGAAGAGCTCAGTGCAGCGGATCGACG
CCTGGGGCAGATCATTCATGAGCAGTCGGGACGCATTGACCGGGTCATCGAAAATGTCCTGCAATTGTCGCGCAGACGCG
AAGCGCAACCCGAACTGCTCGACCTGAAAACCTGGCTGGAACACTTTGTTGCTGAATTTCGCAGTTCCACAGCGCCCAAT
CAGGCGATTCATGTCGACATCAGCCCCGGCACGCTGACAACCCGCATGGATTCTGGACAGTTGACGCAAATCATGACCAA
CCTGGTGCAGAACGGCCTGCGCTACAGCGGCAAAAATCATCCGTTAGCGCAGGTCTGGCTGAAACTGCACAATGAACCGA
GAAGCGATTTGCCTACGCTGGAAGTGCTGGACGACGGGCCGGGGGTCAGCGAGCAACACCTGAGCAAGATGTTCGAACCG
TTTTTCACCACAGAGAGCAAAGGCACCGGCCTTGGTCTATATCTGTCACGTGAACTGTGCGAAAGCAATCAGGCGCACCT
GGAATATGCGCCCCGCCCCACGGGTGGCAGCTGCCTGCGCATTACCTTCGCCCACCCGTTCAAGACGAGCTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-523)

His Kinase A (phospho-acceptor) domain (HisKA)

(309-373)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

61.017

100

0.611

Multiple sequence alignment