Detailed information NTG0328694

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: EHU52_RS00735
• Genome accession: NZ_CP034071
• Coordinates: 149476..150612 (+)
• Length: 378 a.a.
• NCBI ID: WP_124732814.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain Hpbs1
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 144476..155612

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EHU52_RS00700	panD	144936..145286 (+)	351	WP_124732812.1	aspartate 1-decarboxylase	-
EHU52_RS00705	-	145297..145590 (+)	294	WP_000347917.1	YbaB/EbfC family nucleoid-associated protein	-
EHU52_RS00710	-	145590..146585 (+)	996	WP_124733666.1	PDZ domain-containing protein	-
EHU52_RS00715	comB6	146591..147646 (+)	1056	WP_124733665.1	P-type conjugative transfer protein TrbL	Machinery gene
EHU52_RS00720	comB7	147662..147787 (+)	126	WP_001217874.1	hypothetical protein	Machinery gene
EHU52_RS00725	comB8	147784..148521 (+)	738	WP_075708163.1	virB8 family protein	Machinery gene
EHU52_RS00730	comB9	148521..149483 (+)	963	WP_124732813.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
EHU52_RS00735	comB10	149476..150612 (+)	1137	WP_124732814.1	DNA type IV secretion system protein ComB10	Machinery gene
EHU52_RS00740	-	150682..152094 (+)	1413	WP_124732815.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
EHU52_RS00745	gmd	152108..153253 (+)	1146	WP_031214491.1	GDP-mannose 4,6-dehydratase	-
EHU52_RS00750	-	153246..154178 (+)	933	WP_124732816.1	GDP-L-fucose synthase	-
EHU52_RS00755	hypE	154430..155428 (-)	999	WP_124732817.1	hydrogenase expression/formation protein HypE	-

Sequence

Protein

• Length: 378 a.a.
• Molecular weight: 42060.67 Da
• Isoelectric Point: 9.9227

>NTDB_id=328694 EHU52_RS00735 WP_124732814.1 149476..150612(+) (comB10) [Helicobacter pylori strain Hpbs1]
MNKWIKGALIFVGGFATIVTISLIYHQKPKAPLNNQPNLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMSSSKEETFTSSPIDLKANTTPPKKDFSLKQLDLLASRITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGVTNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPKENEVIAEFLK

Nucleotide

• Length: 1137 bp

>NTDB_id=328694 EHU52_RS00735 WP_124732814.1 149476..150612(+) (comB10) [Helicobacter pylori strain Hpbs1]
ATGAATAAGTGGATTAAGGGGGCGCTTATTTTTGTAGGAGGTTTTGCAACGATTGTAACAATTTCTTTAATCTATCATCA
AAAGCCAAAAGCCCCCCTAAATAACCAACCCAACCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACTAACACAGAAAGCTCCAAAGACGCTACCATCAAAGCTTTACAAGAACAGCTAAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAGCTCTTCTAAAGAAGAAACTTTTACTAGCTCTCCCATAGATTTAAAAGC
AAACACAACCCCCCCTAAAAAAGACTTTTCTCTAAAGCAATTAGATTTACTAGCCTCTCGCATCACCCCCTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAAAGGGATCGATGGTTTTACCAACCTTAAAGAA
AAAGACATCGCTACCAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCCTTTTTGATCACGCC
TATTTCTAGCCAGATTGCCGGTAAAGTCATCGCGCAAGTGGAGAGCGATATTTTTGCTCACATGGGCAAGGCCGTCTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAACAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGC
CGCATCATCACTCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTGGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCGTTACTGCTTTCTACTCTCACTAACGGCTTATTGATTG
GGATCACTTCGGCCTTAAACAACAGGGGCAATAAAGAAGGAGTCACCAATTTCTTTGGGGATTATCTTTTATTGCAATTG
ATGAGACAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAGGGAAGTAGGGTCTTCATTTCGCCCAATACTGACATCTTCTTTCCTATACCCAAAGAGAATGAAGTTATCG
CTGAGTTTTTGAAGTGA

Domains

Predicted by InterproScan.

• Bacterial conjugation TrbI-like protein (TrbI) (173-364)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	94.709	100	0.947