Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB9   Type   Machinery gene
Locus tag   EHU52_RS00730 Genome accession   NZ_CP034071
Coordinates   148521..149483 (+) Length   320 a.a.
NCBI ID   WP_124732813.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpbs1     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 143521..154483
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EHU52_RS00700 panD 144936..145286 (+) 351 WP_124732812.1 aspartate 1-decarboxylase -
  EHU52_RS00705 - 145297..145590 (+) 294 WP_000347917.1 YbaB/EbfC family nucleoid-associated protein -
  EHU52_RS00710 - 145590..146585 (+) 996 WP_124733666.1 PDZ domain-containing protein -
  EHU52_RS00715 comB6 146591..147646 (+) 1056 WP_124733665.1 P-type conjugative transfer protein TrbL Machinery gene
  EHU52_RS00720 comB7 147662..147787 (+) 126 WP_001217874.1 hypothetical protein Machinery gene
  EHU52_RS00725 comB8 147784..148521 (+) 738 WP_075708163.1 virB8 family protein Machinery gene
  EHU52_RS00730 comB9 148521..149483 (+) 963 WP_124732813.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  EHU52_RS00735 comB10 149476..150612 (+) 1137 WP_124732814.1 DNA type IV secretion system protein ComB10 Machinery gene
  EHU52_RS00740 - 150682..152094 (+) 1413 WP_124732815.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  EHU52_RS00745 gmd 152108..153253 (+) 1146 WP_031214491.1 GDP-mannose 4,6-dehydratase -
  EHU52_RS00750 - 153246..154178 (+) 933 WP_124732816.1 GDP-L-fucose synthase -

Sequence

Protein


Download         Length: 320 a.a.        Molecular weight: 36738.38 Da        Isoelectric Point: 9.5814

>NTDB_id=328693 EHU52_RS00730 WP_124732813.1 148521..149483(+) (comB9) [Helicobacter pylori strain Hpbs1]
MRKVLCTLVGFLLVSSALKADDFLEEANETAPANLNHPMQDLNAIQGSFFDKNRSKMSNTLNVDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKVFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQNKENTLEKAPTNNKPLKEEKEETKEEETITIGDNTNAMKIVKKDIQKGYRALKSSQRKWYCLGICSKKSK
LSLMPKEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRFIKKGKDE

Nucleotide


Download         Length: 963 bp        

>NTDB_id=328693 EHU52_RS00730 WP_124732813.1 148521..149483(+) (comB9) [Helicobacter pylori strain Hpbs1]
ATGCGTAAGGTTTTATGCACTCTTGTGGGTTTTTTGTTGGTTTCTAGTGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
TAACGAAACAGCCCCAGCGAATTTAAACCACCCCATGCAGGATTTAAACGCCATTCAAGGGAGCTTTTTTGACAAAAACC
GCTCAAAAATGTCCAACACTTTGAATGTTGATTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGATGCGAAAATTTTAGAAAG
TAACGATCGCATTTTGCTCATCAAACCCCTACAAATTGGCGTGGATTCTAATATCAGCGTGATTGATAATGAGGGTAAGG
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACTAGCTCCAAACACCCTAATTTACAGGTTTTCATAGAAGATAAAAAT
TATTATTCCAACGCTTTTATGAAGCCACAAAACAAAGAAAATACCCTTGAAAAGGCTCCCACAAACAACAAACCCTTAAA
AGAAGAAAAAGAAGAAACCAAAGAAGAAGAGACTATAACGATTGGCGATAACACTAATGCAATGAAAATCGTTAAAAAAG
ACATTCAAAAAGGCTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTAGGGATTTGTTCTAAAAAATCCAAA
CTCTCTTTGATGCCTAAAGAAATTTTCAACGACAAGCAATTCACTTATTTCAAATTTGACAAAAAATTAGCGCTCTCTAA
ATTCCCGGTGATTTATAAAGTCGTTGATGGTTATGATAACCCGGTGAATACTAGGATTGTGGGCGATTACATTATCGCTG
AAGATGTTTCGGCTAAATGGACTTTAAGATTAGGTAAGGACTATTTGTGTATCCGTTTTATCAAAAAGGGTAAAGATGAA
TAA

Domains

Predicted by InterproScan.

Conjugal transfer protein (CagX)

(62-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB9 Helicobacter pylori P1

92.025

100

0.938

Multiple sequence alignment