Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB8   Type   Machinery gene
Locus tag   EHU52_RS00725 Genome accession   NZ_CP034071
Coordinates   147784..148521 (+) Length   245 a.a.
NCBI ID   WP_075708163.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpbs1     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 142784..153521
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EHU52_RS00700 panD 144936..145286 (+) 351 WP_124732812.1 aspartate 1-decarboxylase -
  EHU52_RS00705 - 145297..145590 (+) 294 WP_000347917.1 YbaB/EbfC family nucleoid-associated protein -
  EHU52_RS00710 - 145590..146585 (+) 996 WP_124733666.1 PDZ domain-containing protein -
  EHU52_RS00715 comB6 146591..147646 (+) 1056 WP_124733665.1 P-type conjugative transfer protein TrbL Machinery gene
  EHU52_RS00720 comB7 147662..147787 (+) 126 WP_001217874.1 hypothetical protein Machinery gene
  EHU52_RS00725 comB8 147784..148521 (+) 738 WP_075708163.1 virB8 family protein Machinery gene
  EHU52_RS00730 comB9 148521..149483 (+) 963 WP_124732813.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  EHU52_RS00735 comB10 149476..150612 (+) 1137 WP_124732814.1 DNA type IV secretion system protein ComB10 Machinery gene
  EHU52_RS00740 - 150682..152094 (+) 1413 WP_124732815.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  EHU52_RS00745 gmd 152108..153253 (+) 1146 WP_031214491.1 GDP-mannose 4,6-dehydratase -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 28516.72 Da        Isoelectric Point: 8.9546

>NTDB_id=328692 EHU52_RS00725 WP_075708163.1 147784..148521(+) (comB8) [Helicobacter pylori strain Hpbs1]
MKEKPFNSEQLIYLEELLSHQEKHLENKLSGFSVNDLDMQSVFRLERNRLKIAYKLLGLMSFIALVLAIVLISVLPLQKT
EHHFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQNSIY
AQSHLEREVHIVNIAIYQQDNNPIASVSIAAKLMNENKLVYEKRYKIVLSYLFDTPDFDYASMPKNPTGFKVTRYSITEI
TNRGD

Nucleotide


Download         Length: 738 bp        

>NTDB_id=328692 EHU52_RS00725 WP_075708163.1 147784..148521(+) (comB8) [Helicobacter pylori strain Hpbs1]
ATGAAAGAAAAGCCTTTCAATAGCGAGCAATTGATCTATTTAGAAGAGCTTTTAAGCCACCAAGAAAAGCATTTAGAAAA
CAAGCTTTCTGGTTTTTCGGTGAATGATTTGGACATGCAAAGCGTGTTTAGATTAGAGAGGAACCGCTTGAAAATCGCTT
ATAAACTCTTAGGCTTGATGAGTTTTATCGCTCTTGTTTTAGCGATTGTTTTAATCAGTGTTTTACCCCTACAAAAAACC
GAACACCATTTCGTGGATTTTTTAAATCAGGACAAGCATTACGCCATTATCCAAAGAGCGGATAAAAGCATTTCCAGTAA
TGAAGCGTTGGCTCGTTCGCTCATTGGAGCGTATGTGTTAAACCGAGAGAGCATTAACCGCATTGACGATAAATCGCGCT
ATGAATTGGTGCGCTTGCAAAGCAGTTCTAAAGTGTGGCAACGCTTTGAGGATTTGATCAAAACGCAAAACAGCATTTAT
GCGCAAAGCCATTTGGAAAGAGAAGTCCATATCGTCAATATTGCGATCTATCAGCAAGACAATAACCCCATTGCGAGCGT
CTCCATTGCAGCTAAACTCATGAACGAAAACAAGCTGGTGTATGAAAAGCGTTATAAAATCGTGCTGAGTTATTTGTTTG
ACACCCCGGATTTTGATTACGCTTCCATGCCTAAAAACCCTACCGGCTTTAAAGTTACTCGCTACAGCATCACTGAAATC
ACTAATAGGGGCGATTGA

Domains

Predicted by InterproScan.

VirB8 protein (VirB8)

(38-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB8 Helicobacter pylori P1

96.356

100

0.971

Multiple sequence alignment