Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   EGX88_RS24580 Genome accession   NZ_CP034060
Coordinates   4498005..4498541 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Shigella flexneri strain FDAARGOS_535     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4493005..4503541
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGX88_RS24560 (EGX88_24565) aphA 4493294..4494007 (+) 714 WP_001226928.1 acid phosphatase AphA -
  EGX88_RS24565 (EGX88_24570) - 4494118..4494534 (+) 417 WP_000270367.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  EGX88_RS24570 (EGX88_24575) - 4494538..4494894 (+) 357 WP_000155673.1 MmcQ/YjbR family DNA-binding protein -
  EGX88_RS24575 (EGX88_24580) uvrA 4494929..4497751 (-) 2823 WP_000357740.1 excinuclease ABC subunit UvrA -
  EGX88_RS24580 (EGX88_24590) ssb 4498005..4498541 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  EGX88_RS26420 - 4499396..4499494 (+) 99 Protein_4446 hypothetical protein -
  EGX88_RS24590 (EGX88_24600) mdtN 4499513..4500544 (+) 1032 WP_000446341.1 multidrug efflux transporter periplasmic adaptor subunit MdtN -
  EGX88_RS24595 (EGX88_24605) mdtO 4500544..4502592 (+) 2049 WP_001275132.1 multidrug efflux transporter permease subunit MdtO -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=328666 EGX88_RS24580 WP_000168305.1 4498005..4498541(+) (ssb) [Shigella flexneri strain FDAARGOS_535]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=328666 EGX88_RS24580 WP_000168305.1 4498005..4498541(+) (ssb) [Shigella flexneri strain FDAARGOS_535]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAACCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489

Multiple sequence alignment