Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   EG219_RS11095 Genome accession   NZ_CP034037
Coordinates   2292358..2292693 (+) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus velezensis strain BCSo1     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2287358..2297693
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EG219_RS11075 (EG219_11075) gcvT 2287964..2289064 (-) 1101 WP_007408332.1 glycine cleavage system aminomethyltransferase GcvT -
  EG219_RS11080 (EG219_11080) - 2289488..2291158 (+) 1671 WP_007408331.1 SNF2-related protein -
  EG219_RS11085 (EG219_11085) - 2291180..2291974 (+) 795 WP_007408330.1 YqhG family protein -
  EG219_RS11090 (EG219_11090) sinI 2292151..2292324 (+) 174 WP_003153105.1 anti-repressor SinI family protein Regulator
  EG219_RS11095 (EG219_11095) sinR 2292358..2292693 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  EG219_RS11100 (EG219_11100) - 2292741..2293526 (-) 786 WP_007408329.1 TasA family protein -
  EG219_RS11105 (EG219_11105) - 2293591..2294175 (-) 585 WP_007408328.1 signal peptidase I -
  EG219_RS11110 (EG219_11110) tapA 2294147..2294818 (-) 672 WP_020954230.1 amyloid fiber anchoring/assembly protein TapA -
  EG219_RS11115 (EG219_11115) - 2295077..2295406 (+) 330 WP_020954231.1 DUF3889 domain-containing protein -
  EG219_RS11120 (EG219_11120) - 2295446..2295625 (-) 180 WP_003153093.1 YqzE family protein -
  EG219_RS11125 (EG219_11125) comGG 2295682..2296059 (-) 378 WP_007408325.1 competence type IV pilus minor pilin ComGG Machinery gene
  EG219_RS11130 (EG219_11130) comGF 2296060..2296560 (-) 501 WP_258566475.1 competence type IV pilus minor pilin ComGF -
  EG219_RS11135 (EG219_11135) comGE 2296469..2296783 (-) 315 WP_007408323.1 competence type IV pilus minor pilin ComGE -
  EG219_RS11140 (EG219_11140) comGD 2296767..2297204 (-) 438 WP_124693411.1 competence type IV pilus minor pilin ComGD Machinery gene
  EG219_RS11145 (EG219_11145) comGC 2297194..2297502 (-) 309 WP_003153087.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=328543 EG219_RS11095 WP_003153104.1 2292358..2292693(+) (sinR) [Bacillus velezensis strain BCSo1]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=328543 EG219_RS11095 WP_003153104.1 2292358..2292693(+) (sinR) [Bacillus velezensis strain BCSo1]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCGATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991

Multiple sequence alignment