Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilL   Type   Machinery gene
Locus tag   EGH17_RS03150 Genome accession   NZ_CP034030
Coordinates   522817..523290 (+) Length   157 a.a.
NCBI ID   WP_012503482.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain FQ02     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 517817..528290
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGH17_RS03120 (EGH17_03120) dnaB 518271..519677 (+) 1407 WP_047923824.1 replicative DNA helicase -
  EGH17_RS03130 (EGH17_03130) pilH 519985..520647 (+) 663 WP_124728918.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  EGH17_RS03135 (EGH17_03135) pilI 520679..521287 (+) 609 WP_047923834.1 type IV pilus modification protein PilV Machinery gene
  EGH17_RS03140 (EGH17_03140) pilJ 521284..522225 (+) 942 WP_047923833.1 PilW family protein Machinery gene
  EGH17_RS03145 (EGH17_03145) pilK 522204..522815 (+) 612 WP_047923832.1 pilus assembly protein Machinery gene
  EGH17_RS03150 (EGH17_03150) pilL 522817..523290 (+) 474 WP_012503482.1 PilX family type IV pilin Machinery gene
  EGH17_RS03155 (EGH17_03155) - 523360..523668 (-) 309 WP_025456241.1 AzlD family protein -
  EGH17_RS03160 (EGH17_03160) - 523665..524376 (-) 712 Protein_525 AzlC family ABC transporter permease -
  EGH17_RS03165 (EGH17_03165) dut 524542..524994 (+) 453 WP_003701071.1 dUTP diphosphatase -
  EGH17_RS03170 (EGH17_03170) dapC 525066..526253 (+) 1188 WP_003701073.1 succinyldiaminopimelate transaminase -
  EGH17_RS03175 (EGH17_03175) yaaA 526409..527188 (+) 780 WP_003687925.1 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17486.30 Da        Isoelectric Point: 9.9561

>NTDB_id=328383 EGH17_RS03150 WP_012503482.1 522817..523290(+) (pilL) [Neisseria gonorrhoeae strain FQ02]
MEQKGFTLIEMMIVVAILGIISVIAIPSYQSYIEKGYQSQLYTEMVGINNVLKQFILKNPQDNNQIIKSKLETFVLGYKM
NPKIAKKYSVSVAFANTEKPRAYRLVGVPKAGTGYTLSVWMNSVGDGYKCRNATSAQTYSETLSANTGCEAFSNRKK

Nucleotide


Download         Length: 474 bp        

>NTDB_id=328383 EGH17_RS03150 WP_012503482.1 522817..523290(+) (pilL) [Neisseria gonorrhoeae strain FQ02]
ATGGAACAAAAAGGGTTTACATTGATTGAGATGATGATAGTTGTCGCGATACTCGGCATTATCAGCGTCATTGCCATACC
TTCTTATCAAAGTTATATTGAAAAAGGCTATCAGTCCCAGCTTTATACGGAGATGGTCGGTATCAACAATGTTCTCAAAC
AGTTTATTTTGAAAAATCCCCAGGACAATAATCAGATCATCAAGAGCAAACTGGAAACATTTGTCTTAGGCTATAAGATG
AATCCGAAAATTGCCAAAAAATATAGTGTTTCGGTGGCATTTGCCAATACGGAAAAACCAAGGGCATACAGGTTGGTCGG
CGTTCCGAAGGCAGGGACGGGTTATACCTTGTCGGTATGGATGAACAGCGTGGGCGACGGATACAAATGCCGTAATGCCA
CTTCTGCCCAGACCTATTCGGAGACCTTGTCCGCAAATACCGGCTGTGAAGCTTTCTCTAATCGTAAAAAATAG

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(3-25)

Minor type IV pilin, PilX (Pilin_PilX)

(31-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilL Neisseria gonorrhoeae MS11

91.72

100

0.917
  pilX Neisseria meningitidis 8013

85.35

100

0.854

Multiple sequence alignment