Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   EGH17_RS03130 Genome accession   NZ_CP034030
Coordinates   519985..520647 (+) Length   220 a.a.
NCBI ID   WP_124728918.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain FQ02     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 514985..525647
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGH17_RS03090 (EGH17_03090) cysT 515105..515941 (-) 837 WP_047923822.1 sulfate ABC transporter permease subunit CysT -
  EGH17_RS03095 (EGH17_03095) - 516122..516454 (+) 333 WP_003687908.1 hypothetical protein -
  EGH17_RS03100 (EGH17_03100) - 516785..517294 (+) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  EGH17_RS03110 (EGH17_03110) - 517526..518107 (-) 582 WP_047923823.1 superoxide dismutase -
  EGH17_RS03120 (EGH17_03120) dnaB 518271..519677 (+) 1407 WP_047923824.1 replicative DNA helicase -
  EGH17_RS03130 (EGH17_03130) pilH 519985..520647 (+) 663 WP_124728918.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  EGH17_RS03135 (EGH17_03135) pilI 520679..521287 (+) 609 WP_047923834.1 type IV pilus modification protein PilV Machinery gene
  EGH17_RS03140 (EGH17_03140) pilJ 521284..522225 (+) 942 WP_047923833.1 PilW family protein Machinery gene
  EGH17_RS03145 (EGH17_03145) pilK 522204..522815 (+) 612 WP_047923832.1 pilus assembly protein Machinery gene
  EGH17_RS03150 (EGH17_03150) pilL 522817..523290 (+) 474 WP_012503482.1 PilX family type IV pilin Machinery gene
  EGH17_RS03155 (EGH17_03155) - 523360..523668 (-) 309 WP_025456241.1 AzlD family protein -
  EGH17_RS03160 (EGH17_03160) - 523665..524376 (-) 712 Protein_525 AzlC family ABC transporter permease -
  EGH17_RS03165 (EGH17_03165) dut 524542..524994 (+) 453 WP_003701071.1 dUTP diphosphatase -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 24373.88 Da        Isoelectric Point: 9.6051

>NTDB_id=328379 EGH17_RS03130 WP_124728918.1 519985..520647(+) (pilH) [Neisseria gonorrhoeae strain FQ02]
MCTRKQQGFTLIELLIVMAIAAIMATIALPNMGGWIASRRIASHAEQVANLLRFSRGEAVRLNLPVYICPVQVKKDGAPN
NGCDFSKKGRGMLAFGDKNGNKAYDGDTKDVFLRNVVLNDTDDSRINYAFNHIAFGSSQLKADRVVWTFNQNGTFGYLPD
QNLKDNSKFVYSDGYIQIVLTDARAVSDADKKFRSAVVLIDSSGRVEVCRKNDTRAVCKH

Nucleotide


Download         Length: 663 bp        

>NTDB_id=328379 EGH17_RS03130 WP_124728918.1 519985..520647(+) (pilH) [Neisseria gonorrhoeae strain FQ02]
ATGTGTACACGAAAACAACAAGGTTTCACGCTAATAGAGCTGCTCATCGTGATGGCCATTGCAGCCATTATGGCGACGAT
AGCCCTCCCCAATATGGGCGGGTGGATTGCATCACGCCGCATTGCCAGTCACGCGGAGCAGGTTGCCAACCTTTTGCGTT
TTTCCAGGGGCGAAGCCGTTCGGCTCAATCTCCCTGTCTATATCTGTCCTGTTCAAGTTAAAAAAGACGGTGCGCCCAAC
AATGGATGTGATTTCAGCAAGAAGGGGCGGGGAATGTTGGCTTTCGGCGACAAAAACGGCAATAAGGCATATGACGGCGA
TACTAAGGATGTTTTTCTCCGCAACGTGGTATTGAATGATACCGACGACAGCCGGATTAATTATGCCTTCAACCATATCG
CTTTCGGTTCGTCTCAGCTGAAAGCCGACCGTGTAGTTTGGACGTTCAACCAAAACGGGACATTCGGCTATTTGCCCGAT
CAGAATCTCAAGGATAATTCCAAATTTGTTTATTCCGACGGTTATATCCAAATCGTGCTGACAGATGCGAGAGCAGTTTC
AGATGCCGATAAGAAATTCCGTTCGGCGGTGGTTTTGATTGACAGCAGCGGCAGGGTCGAAGTTTGTCGTAAAAACGATA
CGCGCGCCGTATGCAAACATTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(44-204)

Prokaryotic N-terminal methylation motif (N_methyl)

(4-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

95.909

100

0.959

Multiple sequence alignment