Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   EGH17_RS03145 Genome accession   NZ_CP034030
Coordinates   522204..522815 (+) Length   203 a.a.
NCBI ID   WP_047923832.1    Uniprot ID   A0AAX2TSQ3
Organism   Neisseria gonorrhoeae strain FQ02     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 517204..527815
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGH17_RS03110 (EGH17_03110) - 517526..518107 (-) 582 WP_047923823.1 superoxide dismutase -
  EGH17_RS03120 (EGH17_03120) dnaB 518271..519677 (+) 1407 WP_047923824.1 replicative DNA helicase -
  EGH17_RS03130 (EGH17_03130) pilH 519985..520647 (+) 663 WP_124728918.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  EGH17_RS03135 (EGH17_03135) pilI 520679..521287 (+) 609 WP_047923834.1 type IV pilus modification protein PilV Machinery gene
  EGH17_RS03140 (EGH17_03140) pilJ 521284..522225 (+) 942 WP_047923833.1 PilW family protein Machinery gene
  EGH17_RS03145 (EGH17_03145) pilK 522204..522815 (+) 612 WP_047923832.1 pilus assembly protein Machinery gene
  EGH17_RS03150 (EGH17_03150) pilL 522817..523290 (+) 474 WP_012503482.1 PilX family type IV pilin Machinery gene
  EGH17_RS03155 (EGH17_03155) - 523360..523668 (-) 309 WP_025456241.1 AzlD family protein -
  EGH17_RS03160 (EGH17_03160) - 523665..524376 (-) 712 Protein_525 AzlC family ABC transporter permease -
  EGH17_RS03165 (EGH17_03165) dut 524542..524994 (+) 453 WP_003701071.1 dUTP diphosphatase -
  EGH17_RS03170 (EGH17_03170) dapC 525066..526253 (+) 1188 WP_003701073.1 succinyldiaminopimelate transaminase -
  EGH17_RS03175 (EGH17_03175) yaaA 526409..527188 (+) 780 WP_003687925.1 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 22035.98 Da        Isoelectric Point: 8.4486

>NTDB_id=328382 EGH17_RS03145 WP_047923832.1 522204..522815(+) (pilK) [Neisseria gonorrhoeae strain FQ02]
MRKQNTLTGIPTSDGQRGSALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGEFQVLDLEYAA
DSKVTFSENCEKGLCTAVNVRTNDNGNEEAFGNIVVQGKPTVEAVKRSCPAKSGKNSTGLCIDNQGVEYKKGTGKVSKMP
RYIIEYLGVKNGQNVYRVTAKAWGKNANTVVVLQSYVGNNDEQ

Nucleotide


Download         Length: 612 bp        

>NTDB_id=328382 EGH17_RS03145 WP_047923832.1 522204..522815(+) (pilK) [Neisseria gonorrhoeae strain FQ02]
ATGCGCAAACAGAACACTTTGACAGGAATCCCGACTTCTGACGGACAGAGGGGGTCCGCACTGTTTATCGTGCTGATGGT
GATGATAGTCGTGGCCTTTTTGGTTGTAACTGCCGCCCAGTCCTACAATACCGAACAGAGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTAGCCGAGGCGGCTTTGCGGGAGGGCGAATTTCAGGTTTTGGATTTGGAATATGCTGCG
GACAGTAAGGTTACGTTTAGCGAAAACTGTGAAAAAGGTCTGTGTACCGCAGTGAATGTGCGGACAAATGATAATGGTAA
TGAAGAGGCTTTTGGCAATATCGTGGTGCAAGGCAAGCCCACCGTTGAGGCGGTGAAGCGTTCTTGCCCTGCAAAGTCTG
GCAAAAATTCTACCGGCCTGTGCATTGACAATCAGGGAGTGGAATATAAGAAAGGTACGGGAAAAGTCAGCAAAATGCCG
CGCTATATTATCGAATATTTAGGCGTGAAGAACGGACAAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGC
CAATACCGTGGTCGTCCTTCAATCTTATGTAGGCAATAATGATGAGCAATAA

Domains

Predicted by InterproScan.

PilX N-terminal (PilX_N)

(17-67)

Type IV pilus assembly protein PilX C-term (PilX)

(92-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

95.567

100

0.956

Multiple sequence alignment