Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   EGH18_RS12470 Genome accession   NZ_CP034028
Coordinates   2101365..2101865 (-) Length   166 a.a.
NCBI ID   WP_124693335.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain FQ04     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2096365..2106865
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGH18_RS12445 (EGH18_12445) msrAB 2096759..2098327 (-) 1569 WP_003694393.1 bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB -
  EGH18_RS12455 (EGH18_12455) pilA 2098473..2099726 (+) 1254 WP_003696286.1 signal recognition particle-docking protein FtsY Machinery gene
  EGH18_RS13670 - 2099828..2099977 (-) 150 WP_153707856.1 hypothetical protein -
  EGH18_RS12460 (EGH18_12460) - 2099991..2100702 (-) 712 Protein_2133 opacity family porin -
  EGH18_RS12470 (EGH18_12470) pilE 2101365..2101865 (-) 501 WP_124693335.1 pilin Machinery gene
  EGH18_RS14535 (EGH18_12490) - 2102680..2102786 (-) 107 Protein_2135 pilin -
  EGH18_RS12500 (EGH18_12500) lpxC 2102914..2103837 (-) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  EGH18_RS12510 (EGH18_12510) pilE 2104376..2104675 (-) 300 WP_124693336.1 pilin Machinery gene
  EGH18_RS12515 (EGH18_12515) - 2104732..2105106 (-) 375 Protein_2138 pilin -
  EGH18_RS12525 (EGH18_12525) - 2105549..2105899 (-) 351 Protein_2139 pilin -
  EGH18_RS12530 (EGH18_12530) - 2105926..2106276 (-) 351 Protein_2140 pilin -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 17918.26 Da        Isoelectric Point: 5.9080

>NTDB_id=328362 EGH18_RS12470 WP_124693335.1 2101365..2101865(-) (pilE) [Neisseria gonorrhoeae strain FQ04]
MNTLQKGFTLIELMIVIAIVGILAAVALPAYQDYTARAQVSEAILLAEGQKSAVTEYYLNNGKWPEDNASAGVASPADIK
GKYVQKVEVNNGVVTAQMASSNVNKEIQGKKLSLWAKREDGSVKWFCGQPVQRADAKADTVADDKNNNGIDTKHLPSTCR
DNFDAS

Nucleotide


Download         Length: 501 bp        

>NTDB_id=328362 EGH18_RS12470 WP_124693335.1 2101365..2101865(-) (pilE) [Neisseria gonorrhoeae strain FQ04]
ATGAATACCCTTCAAAAAGGCTTTACCCTTATCGAGCTGATGATTGTGATCGCCATCGTCGGCATTTTGGCGGCAGTCGC
CCTTCCAGCATACCAAGACTACACCGCCCGCGCGCAAGTTTCCGAAGCCATCCTTTTGGCCGAAGGTCAAAAATCAGCCG
TTACCGAGTATTACCTGAATAACGGCAAATGGCCGGAAGACAACGCTTCTGCCGGCGTGGCATCCCCCGCCGACATCAAA
GGCAAATATGTTCAGAAAGTTGAAGTCAACAACGGCGTCGTCACCGCCCAAATGGCTTCAAGCAACGTAAACAAAGAAAT
CCAAGGCAAAAAACTCTCCCTGTGGGCCAAGCGTGAAGACGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTCAGCGCG
CCGACGCCAAAGCCGACACCGTTGCCGACGACAAAAACAACAACGGCATCGACACCAAGCACCTGCCGTCAACCTGCCGC
GATAACTTTGATGCCAGCTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(5-28)

Pilin (bacterial filament) (Pilin)

(36-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

83.735

100

0.837
  pilE Neisseria gonorrhoeae MS11

84.568

97.59

0.825
  comP Acinetobacter baylyi ADP1

38.922

100

0.392
  pilA/pilA1 Eikenella corrodens VA1

35.673

100

0.367

Multiple sequence alignment