Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   EGH18_RS02735 Genome accession   NZ_CP034028
Coordinates   451009..451617 (+) Length   202 a.a.
NCBI ID   WP_047926669.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain FQ04     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 446009..456617
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGH18_RS02705 (EGH18_02705) - 446361..446942 (-) 582 WP_003690895.1 superoxide dismutase -
  EGH18_RS02715 (EGH18_02715) dnaB 447106..448509 (+) 1404 WP_012503477.1 replicative DNA helicase -
  EGH18_RS02720 (EGH18_02720) pilH 448766..449428 (+) 663 WP_041421240.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  EGH18_RS02725 (EGH18_02725) pilI 449460..450074 (+) 615 WP_124693319.1 type IV pilus modification protein PilV Machinery gene
  EGH18_RS02730 (EGH18_02730) pilJ 450071..451030 (+) 960 WP_071198137.1 PilW family protein Machinery gene
  EGH18_RS02735 (EGH18_02735) pilK 451009..451617 (+) 609 WP_047926669.1 pilus assembly protein Machinery gene
  EGH18_RS02740 (EGH18_02740) pilL 451619..452089 (+) 471 WP_169577278.1 PilX family type IV pilin Machinery gene
  EGH18_RS02745 (EGH18_02745) - 452159..452467 (-) 309 WP_010951048.1 AzlD family protein -
  EGH18_RS02750 (EGH18_02750) - 452464..453173 (-) 710 Protein_455 AzlC family ABC transporter permease -
  EGH18_RS02755 (EGH18_02755) dut 453339..453791 (+) 453 WP_003690909.1 dUTP diphosphatase -
  EGH18_RS02760 (EGH18_02760) dapC 453869..455056 (+) 1188 WP_003701073.1 succinyldiaminopimelate transaminase -
  EGH18_RS02765 (EGH18_02765) yaaA 455212..455991 (+) 780 WP_003687925.1 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 22152.01 Da        Isoelectric Point: 5.0966

>NTDB_id=328332 EGH18_RS02735 WP_047926669.1 451009..451617(+) (pilK) [Neisseria gonorrhoeae strain FQ04]
MRKQNALTGIPTSEGQRGFALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGEFQVLDLEYTA
DSKVTFSENCENGLCTAVNVRTNDANEETFDNIVVKGKPTVEAVKRPCPAKSGKNSAGLCIDNQGVEYEKGTGNVSKMPR
YIIEYLGEKNNQNIYRVTAKAWGKNANTVVVLQSYVGNNDEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=328332 EGH18_RS02735 WP_047926669.1 451009..451617(+) (pilK) [Neisseria gonorrhoeae strain FQ04]
ATGCGCAAACAGAACGCTTTGACAGGAATCCCGACTTCTGAGGGACAGAGGGGGTTCGCACTGTTTATCGTGCTGATGGT
GATGATAGTCGTGGCCTTTTTGGTTGTAACTGCCGCCCAGTCCTACAATACCGAACAGAGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTAGCCGAGGCGGCTTTGAGGGAAGGCGAATTTCAGGTTTTGGATTTGGAATATACTGCG
GATAGTAAGGTTACATTTAGCGAAAACTGTGAAAACGGCCTGTGTACCGCAGTGAATGTACGGACAAATGATGCTAATGA
AGAGACTTTTGACAATATCGTGGTGAAAGGCAAGCCTACCGTTGAGGCCGTGAAGCGTCCTTGCCCTGCAAAGTCTGGCA
AAAATTCTGCCGGCCTGTGCATTGACAATCAGGGAGTGGAATATGAGAAAGGTACGGGAAACGTCAGCAAAATGCCGCGT
TATATTATCGAATATTTGGGCGAGAAGAATAACCAAAATATTTACAGGGTTACTGCCAAGGCTTGGGGTAAGAATGCCAA
TACCGTGGTCGTCCTGCAATCTTATGTAGGCAATAATGATGAGCAATAA

Domains

Predicted by InterProScan.

PilX N-terminal (PilX_N)

(17-67)

Type IV pilus assembly protein PilX C-term (PilX)

(92-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

93.596

100

0.941

Multiple sequence alignment