Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   EGH20_RS00660 Genome accession   NZ_CP034026
Coordinates   105429..105974 (-) Length   181 a.a.
NCBI ID   WP_124723892.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain FQ20     
Function   pseudopilus extrusion and retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 100429..110974
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGH20_RS00635 (EGH20_00635) - 101430..101942 (-) 513 WP_003687349.1 shikimate kinase -
  EGH20_RS00655 (EGH20_00655) pilQ 103215..105410 (-) 2196 WP_050156267.1 type IV pilus secretin PilQ Machinery gene
  EGH20_RS00660 (EGH20_00660) pilP 105429..105974 (-) 546 WP_124723892.1 pilus assembly protein PilP Machinery gene
  EGH20_RS00665 (EGH20_00665) pilO 105992..106639 (-) 648 WP_003690570.1 type 4a pilus biogenesis protein PilO -
  EGH20_RS00670 (EGH20_00670) pilN 106640..107239 (-) 600 WP_003687354.1 PilN domain-containing protein Machinery gene
  EGH20_RS00675 (EGH20_00675) - 107242..108357 (-) 1116 WP_003687356.1 type IV pilus biogenesis protein PilM -
  EGH20_RS00680 (EGH20_00680) - 108509..110905 (+) 2397 WP_123771774.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 20067.64 Da        Isoelectric Point: 4.8971

>NTDB_id=328268 EGH20_RS00660 WP_124723892.1 105429..105974(-) (pilP) [Neisseria gonorrhoeae strain FQ20]
MKHYALLISFLALSACSQSSEDLNEWMAQTRREAKAEIIPFQAPTLPVAPVYSPPQLTGPNAFDFRRMETAKKGENAPDT
KRIKETLEKFSLENMRYVGILKSGKKVSGFIEAEGYVYTVGVGNYLGQNYGRIESITDDSIILNELIEDSTGNWVSRKAE
LLLNSSDKNTEQAAAPAAEQN

Nucleotide


Download         Length: 546 bp        

>NTDB_id=328268 EGH20_RS00660 WP_124723892.1 105429..105974(-) (pilP) [Neisseria gonorrhoeae strain FQ20]
ATGAAACACTATGCCTTACTCATCAGCTTTCTGGCTCTCTCCGCGTGTTCCCAAAGTTCTGAAGACCTAAACGAATGGAT
GGCACAAACGCGACGCGAAGCCAAAGCAGAAATCATACCTTTCCAAGCACCTACCCTGCCGGTTGCGCCGGTATACAGCC
CGCCGCAGCTTACAGGGCCGAACGCATTCGACTTCCGCCGCATGGAAACCGCCAAAAAAGGGGAAAATGCCCCCGACACC
AAGCGTATTAAAGAAACGTTGGAAAAATTCAGTTTGGAAAATATGCGTTATGTCGGCATTTTGAAGTCCGGAAAGAAAGT
CTCCGGCTTCATCGAGGCTGAAGGTTATGTCTACACTGTCGGTGTCGGCAACTATTTGGGACAAAACTACGGTAGAATCG
AAAGCATTACCGACGACAGCATCATCCTGAACGAGCTGATAGAAGACAGCACGGGCAACTGGGTTTCCCGTAAAGCAGAA
CTGCTGTTGAATTCTTCCGACAAAAACACCGAACAAGCGGCAGCACCTGCCGCAGAACAAAATTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(22-163)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Neisseria meningitidis MC58

97.79

100

0.978

Multiple sequence alignment