Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   EGH20_RS00670 Genome accession   NZ_CP034026
Coordinates   106640..107239 (-) Length   199 a.a.
NCBI ID   WP_003687354.1    Uniprot ID   A0AA44U8R8
Organism   Neisseria gonorrhoeae strain FQ20     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 101640..112239
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGH20_RS00655 (EGH20_00655) pilQ 103215..105410 (-) 2196 WP_050156267.1 type IV pilus secretin PilQ Machinery gene
  EGH20_RS00660 (EGH20_00660) pilP 105429..105974 (-) 546 WP_124723892.1 pilus assembly protein PilP Machinery gene
  EGH20_RS00665 (EGH20_00665) pilO 105992..106639 (-) 648 WP_003690570.1 type 4a pilus biogenesis protein PilO -
  EGH20_RS00670 (EGH20_00670) pilN 106640..107239 (-) 600 WP_003687354.1 PilN domain-containing protein Machinery gene
  EGH20_RS00675 (EGH20_00675) - 107242..108357 (-) 1116 WP_003687356.1 type IV pilus biogenesis protein PilM -
  EGH20_RS00680 (EGH20_00680) - 108509..110905 (+) 2397 WP_123771774.1 penicillin-binding protein 1A -
  EGH20_RS00685 (EGH20_00685) yihA 111026..111655 (-) 630 WP_003687358.1 ribosome biogenesis GTP-binding protein YihA/YsxC -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 22183.53 Da        Isoelectric Point: 9.8898

>NTDB_id=328269 EGH20_RS00670 WP_003687354.1 106640..107239(-) (pilN) [Neisseria gonorrhoeae strain FQ20]
MNNLIKINLLPYREEMNKRKQQQFKTLMYGAVLTGVAAVAATYLFIDNMINKQSEKNTLLEISIAHLDTELSEIQKLKQE
KDAFLIKKNKIGELQIKRLQAAKILDSLNEAVPGSTYLTSLDAVTADSYRLSGRTSSDNRVAAMMRAMPNTGIFKQPELL
SIKKNNSHQEFTLQATLQPIVKAAESKENPASGNAQEAN

Nucleotide


Download         Length: 600 bp        

>NTDB_id=328269 EGH20_RS00670 WP_003687354.1 106640..107239(-) (pilN) [Neisseria gonorrhoeae strain FQ20]
ATGAACAATTTAATCAAAATCAACCTCCTCCCCTACAGGGAAGAGATGAACAAACGCAAACAGCAGCAGTTTAAAACGCT
GATGTACGGCGCCGTGCTGACGGGCGTTGCCGCCGTTGCGGCAACCTACCTGTTTATCGACAATATGATCAATAAACAGT
CGGAAAAAAACACGCTGCTGGAAATCTCCATCGCACACTTGGATACCGAGCTGTCGGAAATACAAAAGCTCAAACAGGAA
AAAGATGCCTTCCTGATTAAGAAAAACAAAATCGGGGAGCTCCAAATCAAACGCCTCCAAGCCGCAAAAATCCTCGACAG
CCTGAATGAGGCCGTCCCCGGAAGCACCTACCTAACCTCGCTGGATGCCGTTACCGCCGACTCTTATCGGCTCAGCGGCA
GGACATCCAGCGACAACCGCGTTGCCGCCATGATGAGGGCGATGCCCAATACCGGCATATTCAAGCAACCCGAATTGTTA
AGCATCAAGAAAAACAATTCGCATCAAGAATTTACCCTTCAGGCAACATTACAACCTATCGTAAAGGCGGCCGAATCCAA
AGAGAATCCGGCTTCGGGAAACGCACAGGAGGCAAACTGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(104-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Neisseria meningitidis strain C311

97.487

100

0.975

Multiple sequence alignment