Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilL   Type   Machinery gene
Locus tag   EGH14_RS02765 Genome accession   NZ_CP034024
Coordinates   453254..453727 (+) Length   157 a.a.
NCBI ID   WP_170959666.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain FQ35     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 448254..458727
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGH14_RS02735 (EGH14_02735) dnaB 448681..450087 (+) 1407 WP_047920786.1 replicative DNA helicase -
  EGH14_RS02745 (EGH14_02745) pilH 450395..451060 (+) 666 WP_047920982.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  EGH14_RS02750 (EGH14_02750) pilI 451092..451700 (+) 609 WP_047920984.1 type IV pilus modification protein PilV Machinery gene
  EGH14_RS02755 (EGH14_02755) pilJ 451697..452665 (+) 969 WP_047920986.1 PilW family protein Machinery gene
  EGH14_RS02760 (EGH14_02760) pilK 452644..453252 (+) 609 WP_047920987.1 pilus assembly protein Machinery gene
  EGH14_RS02765 (EGH14_02765) pilL 453254..453727 (+) 474 WP_170959666.1 PilX family type IV pilin Machinery gene
  EGH14_RS02770 (EGH14_02770) - 453797..454105 (-) 309 WP_047920338.1 AzlD family protein -
  EGH14_RS13365 - 454102..454812 (-) 711 Protein_457 AzlC family ABC transporter permease -
  EGH14_RS02780 (EGH14_02780) dut 454978..455430 (+) 453 WP_010359930.1 dUTP diphosphatase -
  EGH14_RS02785 (EGH14_02785) dapC 455508..456695 (+) 1188 WP_123776160.1 succinyldiaminopimelate transaminase -
  EGH14_RS02790 (EGH14_02790) yaaA 457006..457785 (+) 780 WP_124723909.1 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17412.10 Da        Isoelectric Point: 9.3990

>NTDB_id=328233 EGH14_RS02765 WP_170959666.1 453254..453727(+) (pilL) [Neisseria gonorrhoeae strain FQ35]
MEQKGFTLIEMMIVVAILGIISVIAIPSYQSYIEKGYQSQLYTEMVGINNVLKQFILKNPQDDNDTLKSKLGIFVSGYKM
NPKIAKKYSVSVMFVDKEKSRAYRLVGVPNAGTGYTLSVWMNSVGDGYKCRDATSAQAYSDTLSADSGCEAFSNRKK

Nucleotide


Download         Length: 474 bp        

>NTDB_id=328233 EGH14_RS02765 WP_170959666.1 453254..453727(+) (pilL) [Neisseria gonorrhoeae strain FQ35]
ATGGAACAAAAAGGGTTTACATTGATTGAGATGATGATAGTTGTCGCGATACTCGGCATCATCAGCGTCATTGCCATACC
TTCTTATCAGAGTTATATTGAAAAAGGCTATCAGTCCCAGCTTTATACGGAGATGGTCGGTATCAACAATGTTCTCAAAC
AGTTTATTTTGAAAAATCCCCAGGACGATAATGATACCCTCAAGAGCAAACTGGGAATATTTGTCTCAGGCTATAAGATG
AATCCGAAAATTGCCAAAAAATATAGTGTTTCGGTAATGTTTGTCGATAAGGAAAAATCAAGGGCATACAGGTTGGTCGG
CGTTCCGAACGCGGGGACGGGTTATACTTTGTCGGTATGGATGAACAGCGTGGGCGACGGATACAAATGCCGTGATGCCA
CTTCTGCCCAGGCCTATTCGGACACCTTGTCCGCAGATAGCGGCTGTGAAGCTTTCTCTAATCGTAAAAAATAG

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(3-25)

Minor type IV pilin, PilX (Pilin_PilX)

(31-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilL Neisseria gonorrhoeae MS11

93.631

100

0.936
  pilX Neisseria meningitidis 8013

85.987

100

0.86

Multiple sequence alignment