Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   FOG69_RS13345 Genome accession   NZ_CP041693
Coordinates   2579853..2581625 (-) Length   590 a.a.
NCBI ID   WP_014470794.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain H     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2574853..2586625
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOG69_RS13325 (FOG69_13325) sdhA 2575065..2576825 (-) 1761 WP_013353100.1 succinate dehydrogenase flavoprotein subunit -
  FOG69_RS13330 (FOG69_13330) sdhC 2576859..2577467 (-) 609 WP_003152571.1 succinate dehydrogenase cytochrome B558 -
  FOG69_RS13335 (FOG69_13335) - 2577764..2578210 (+) 447 WP_013353101.1 YslB family protein -
  FOG69_RS13340 (FOG69_13340) - 2578257..2579486 (-) 1230 WP_013353102.1 aspartate kinase -
  FOG69_RS13345 (FOG69_13345) uvrC 2579853..2581625 (-) 1773 WP_014470794.1 excinuclease ABC subunit UvrC Machinery gene
  FOG69_RS13350 (FOG69_13350) trxA 2581771..2582085 (-) 315 WP_003152560.1 thioredoxin -
  FOG69_RS13355 (FOG69_13355) - 2582237..2583727 (-) 1491 WP_014470795.1 alpha-N-arabinofuranosidase -
  FOG69_RS13360 (FOG69_13360) - 2583941..2584918 (-) 978 WP_014470796.1 electron transfer flavoprotein subunit alpha/FixB family protein -
  FOG69_RS13365 (FOG69_13365) - 2584950..2585723 (-) 774 WP_013353106.1 electron transfer flavoprotein subunit beta/FixA family protein -
  FOG69_RS13370 (FOG69_13370) - 2585737..2586516 (-) 780 WP_014470797.1 enoyl-CoA hydratase -

Sequence

Protein


Download         Length: 590 a.a.        Molecular weight: 68434.28 Da        Isoelectric Point: 9.5378

>NTDB_id=328231 FOG69_RS13345 WP_014470794.1 2579853..2581625(-) (uvrC) [Bacillus amyloliquefaciens strain H]
MNKQLKEKLALLPDQPGCYLMKDRQKTVIYVGKAKVLKNRVRSYFTGSHDAKTQRLVTEIEDFEYIVTSSNLEALILEMN
LIKKYDPKYNVMLKDDKTYPFIKITHERHPRLIVTRNVKKDKGRYFGPYPNVQAARETKKLLDRLYPLRKCSKLPDRVCL
YYHLGQCLAPCVKDISEETNRELVEDITRFLKGGHNEVKKELEEKMTEAAEKLEFERAKEFRDQLAHIESTMEKQKMTMN
DLLDRDVFAYAYDKGWMCVQVFFIRQGKLIERDVSMFPMYQEADEEFLTYIGQFYSKNNHFLPKEILVPDSVDRDMISEL
LETAVYQPKKGPKKELLLLAHKNAKIALREKFSLIERDEERSIGAAERLGEALNIYTPHRIEAFDNSNIQGTNPVSAMIV
FIDGKPNKKEYRKYKIKTVTGPDDYGSMREVVRRRYSRVLRENLPLPDLIIIDGGKGQINAARDVLENELGLDVPVAGLA
KDDKHRTSNLLIGDPLEPVFLERNSQEFYLLQRIQDEVHRFAISFHRQIRGKSAFQSVLDDIPGIGEKRKKMLLKHFGSV
KKMKEASLDDIKKAGVPAAAAQMLFEKLKK

Nucleotide


Download         Length: 1773 bp        

>NTDB_id=328231 FOG69_RS13345 WP_014470794.1 2579853..2581625(-) (uvrC) [Bacillus amyloliquefaciens strain H]
ATGAATAAACAACTGAAAGAAAAGCTGGCCCTCCTTCCCGATCAGCCAGGCTGTTATTTAATGAAAGACCGTCAAAAAAC
AGTCATCTACGTGGGGAAAGCGAAGGTGCTGAAAAACAGGGTGCGATCCTATTTCACCGGTTCTCACGACGCAAAAACCC
AAAGGCTTGTGACGGAGATTGAGGACTTTGAATATATCGTGACTTCCTCCAATCTTGAAGCGCTTATTTTGGAAATGAAT
CTGATTAAAAAATACGATCCGAAATACAATGTCATGCTGAAAGATGATAAAACCTATCCCTTTATTAAAATCACCCATGA
ACGCCATCCGCGGCTTATTGTCACCCGGAATGTCAAAAAAGACAAAGGGCGCTATTTCGGCCCGTACCCGAATGTGCAGG
CGGCGCGGGAAACGAAAAAACTGCTGGACCGCCTATACCCGCTCAGGAAGTGCTCGAAGCTTCCGGACCGCGTCTGTCTT
TATTATCATCTCGGACAATGCCTCGCTCCTTGTGTTAAAGATATTTCTGAGGAGACAAACCGCGAGCTGGTTGAAGATAT
CACCCGTTTTTTAAAGGGAGGGCATAACGAGGTCAAAAAAGAGCTTGAAGAGAAAATGACAGAGGCGGCGGAAAAGCTTG
AATTTGAACGGGCTAAAGAATTCCGCGATCAGCTTGCTCACATCGAATCGACGATGGAGAAGCAGAAAATGACCATGAAT
GACCTTTTGGACCGCGATGTGTTTGCTTATGCCTACGATAAAGGCTGGATGTGCGTCCAGGTCTTTTTCATACGCCAGGG
AAAGCTGATTGAACGCGATGTCAGCATGTTTCCGATGTATCAGGAAGCGGATGAGGAATTCCTGACCTACATCGGCCAGT
TCTATTCTAAAAACAATCACTTTCTGCCTAAAGAAATTCTGGTGCCTGACAGCGTGGACAGGGACATGATCAGCGAGCTT
TTGGAAACCGCCGTGTATCAGCCGAAAAAGGGCCCGAAAAAAGAGCTGCTTTTGCTTGCGCACAAAAATGCGAAAATCGC
TCTGCGGGAAAAATTCTCATTAATCGAGCGGGATGAGGAACGGTCAATCGGTGCTGCCGAACGGCTCGGTGAGGCGCTGA
ACATTTACACGCCGCATCGGATTGAAGCATTTGACAACTCCAATATTCAAGGCACAAACCCTGTATCGGCCATGATTGTC
TTTATTGACGGTAAGCCCAATAAAAAGGAATACCGCAAATATAAAATTAAAACCGTAACAGGGCCTGACGATTACGGCTC
TATGAGGGAAGTCGTCAGAAGAAGATATTCGAGGGTGCTCCGCGAAAATCTCCCGCTGCCGGATTTAATCATCATTGACG
GCGGAAAAGGGCAGATTAATGCGGCGCGCGACGTGCTCGAAAATGAGCTCGGCCTTGATGTCCCGGTAGCGGGATTGGCG
AAGGATGATAAACACCGAACATCCAACCTTTTGATCGGCGATCCGCTTGAACCGGTGTTTCTGGAGCGGAACAGCCAGGA
ATTTTACCTGCTTCAGCGCATTCAGGACGAAGTTCACCGCTTTGCGATCAGTTTTCACAGGCAGATCCGGGGAAAAAGCG
CCTTTCAATCCGTTTTGGATGATATCCCGGGAATCGGCGAAAAACGCAAAAAAATGCTCTTAAAGCATTTCGGATCTGTC
AAAAAGATGAAGGAAGCAAGCCTTGACGATATTAAAAAAGCCGGTGTGCCGGCTGCGGCGGCTCAGATGCTGTTTGAAAA
ATTGAAAAAATAG

Domains

Predicted by InterProScan.

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(373-523)

UvrB/uvrC motif (UVR)

(197-229)

GIY-YIG catalytic domain (GIY-YIG)

(16-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Streptococcus pneumoniae TIGR4

59.524

99.661

0.593
  uvrC Streptococcus pneumoniae R6

59.184

99.661

0.59
  uvrC Streptococcus pneumoniae D39

59.184

99.661

0.59

Multiple sequence alignment