Detailed information NTG0328229

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: FOG69_RS13210
• Genome accession: NZ_CP041693
• Coordinates: 2554648..2555910 (-)
• Length: 420 a.a.
• NCBI ID: WP_014470784.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain H
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 2549648..2560910

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FOG69_RS13195 (FOG69_13195)	yihA	2549732..2550319 (-)	588	WP_013353078.1	ribosome biogenesis GTP-binding protein YihA/YsxC	-
FOG69_RS13200 (FOG69_13200)	lon	2550316..2552640 (-)	2325	WP_013353079.1	endopeptidase La	-
FOG69_RS13205 (FOG69_13205)	lonB	2552839..2554497 (-)	1659	WP_013353080.1	ATP-dependent protease LonB	-
FOG69_RS13210 (FOG69_13210)	clpX	2554648..2555910 (-)	1263	WP_014470784.1	ATP-dependent protease ATP-binding subunit ClpX	Regulator
FOG69_RS13215 (FOG69_13215)	tig	2556182..2557456 (-)	1275	WP_014470785.1	trigger factor	-
FOG69_RS13220 (FOG69_13220)	ddcA	2557673..2558677 (-)	1005	WP_013353083.1	DNA damage checkpoint antagonist DdcA	-
FOG69_RS13225 (FOG69_13225)	leuD	2558796..2559395 (-)	600	WP_013353084.1	3-isopropylmalate dehydratase small subunit	-
FOG69_RS13230 (FOG69_13230)	leuC	2559410..2560828 (-)	1419	WP_013353085.1	3-isopropylmalate dehydratase large subunit	-

Sequence

Protein

• Length: 420 a.a.
• Molecular weight: 46261.03 Da
• Isoelectric Point: 4.4885

>NTDB_id=328229 FOG69_RS13210 WP_014470784.1 2554648..2555910(-) (clpX) [Bacillus amyloliquefaciens strain H]
MFKFNEEKGQLKCSFCGKTQDQVRKLVAGPGVYICDECIELCTEIVEEELGTEEEVEFKDVPKPQEIREILNEYVIGQDQ
AKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGSGKTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILL
KLIQAADYDVEKAEKGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTNI
LFICGGAFDGIEQIIKRRLGQKVIGFGSDNKVADLEKEELLSKVLPEDLLRFGLIPEFIGRLPVIASLEQLDETALVEIL
TKPKNALVKQYKKMLELDDVELDFEDEALSEIAKKAIERKTGARGLRSIIEGIMLDVMFDLPSRDDIEKCVITGATVADG
EAPRLVLKDGTVVGQDKTSA

Nucleotide

• Length: 1263 bp

>NTDB_id=328229 FOG69_RS13210 WP_014470784.1 2554648..2555910(-) (clpX) [Bacillus amyloliquefaciens strain H]
ATGTTTAAATTCAACGAGGAAAAAGGACAATTAAAATGCTCGTTCTGCGGAAAAACGCAAGATCAGGTTCGTAAGCTGGT
TGCAGGACCGGGTGTATATATATGCGACGAATGCATCGAGCTCTGTACAGAAATCGTAGAAGAAGAGCTGGGCACAGAAG
AAGAAGTCGAATTTAAAGACGTTCCGAAGCCGCAGGAAATCCGTGAGATTCTGAATGAATATGTCATCGGACAGGATCAG
GCGAAGAAATCACTTGCGGTTGCGGTATACAACCATTACAAACGCATCAACTCCAACAGTAAAGTGGATGATGTCGAGCT
TTCTAAAAGTAATATTTCATTAATCGGGCCGACTGGAAGCGGGAAAACACTTCTCGCCCAGACACTTGCGCGTATTCTGA
ACGTGCCGTTTGCGATCGCGGACGCTACATCTCTGACTGAAGCCGGATATGTCGGTGAGGACGTAGAAAACATTCTCCTC
AAACTGATTCAGGCAGCAGACTATGATGTGGAAAAAGCGGAAAAAGGCATTATTTATATCGATGAAATCGATAAAGTAGC
GCGTAAATCTGAAAACCCGTCCATCACACGTGACGTATCAGGCGAAGGCGTTCAGCAGGCGCTGCTGAAAATTCTTGAAG
GAACGGTTGCAAGCGTGCCGCCTCAAGGAGGGCGCAAACATCCTCATCAGGAATTCATTCAGATCGATACGACGAACATT
CTGTTCATTTGCGGGGGTGCATTTGACGGCATCGAACAAATCATTAAACGCCGTCTCGGACAAAAAGTCATCGGCTTCGG
CTCTGATAATAAAGTGGCAGACTTGGAAAAAGAAGAACTGCTTTCTAAAGTTCTTCCGGAAGACTTGCTTCGTTTCGGGC
TGATTCCTGAATTCATCGGCCGTCTTCCTGTCATTGCAAGCCTTGAGCAGCTTGACGAAACGGCACTGGTTGAAATTCTG
ACTAAACCTAAAAACGCACTCGTCAAACAATACAAGAAAATGTTAGAACTAGATGATGTCGAGCTTGATTTTGAAGACGA
GGCATTATCTGAAATTGCGAAAAAAGCGATCGAGCGAAAAACAGGCGCACGCGGCCTGCGTTCTATCATTGAGGGCATCA
TGCTTGACGTCATGTTTGATCTGCCGTCCCGCGATGACATTGAAAAATGTGTCATTACCGGAGCGACAGTGGCAGACGGT
GAAGCACCGCGTCTTGTATTAAAAGACGGCACTGTTGTCGGTCAAGATAAAACATCAGCGTAA

Domains

Predicted by InterProScan.

• AAA domain (Cdc48 subfamily) (AAA_2) (109-305)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (311-389)

• ClpX C4-type zinc finger (zf-C4_ClpX) (11-48)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	68.01	94.524	0.643
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	59.158	96.19	0.569