Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   SP670_RS06165 Genome accession   NC_014498
Coordinates   1174536..1175216 (-) Length   226 a.a.
NCBI ID   WP_000286929.1    Uniprot ID   C1CE75
Organism   Streptococcus pneumoniae 670-6B     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1169536..1180216
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SP670_RS06130 (SP670_1243) - 1169766..1170335 (+) 570 WP_000681293.1 CYTH domain-containing protein -
  SP670_RS06135 (SP670_1244) - 1170448..1171408 (+) 961 Protein_1188 ribose-phosphate diphosphokinase -
  SP670_RS06140 (SP670_1245) - 1171418..1172533 (+) 1116 WP_000639662.1 cysteine desulfurase family protein -
  SP670_RS06145 (SP670_1246) - 1172538..1172885 (+) 348 WP_000863508.1 DUF1831 domain-containing protein -
  SP670_RS06150 (SP670_1247) - 1172893..1173108 (+) 216 WP_000462488.1 DUF4649 family protein -
  SP670_RS06155 (SP670_1248) - 1173191..1173832 (+) 642 WP_000653403.1 redox-sensing transcriptional repressor Rex -
  SP670_RS06160 (SP670_1249) - 1173850..1174539 (+) 690 WP_000743330.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  SP670_RS06165 (SP670_1250) radC 1174536..1175216 (-) 681 WP_000286929.1 DNA repair protein RadC Machinery gene
  SP670_RS06170 (SP670_1251) pcrA 1175259..1177550 (-) 2292 WP_000992879.1 DNA helicase PcrA -
  SP670_RS06185 (SP670_1254) - 1178924..1179784 (-) 861 WP_000631540.1 methionyl aminopeptidase -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 25563.59 Da        Isoelectric Point: 7.1203

>NTDB_id=32823 SP670_RS06165 WP_000286929.1 1174536..1175216(-) (radC) [Streptococcus pneumoniae 670-6B]
MYSISFQEDSLLPRERLAKEGVEALSNQELLAILLRTGTRQVSVFEIAQKVLNNLSSLTDLKKMTLQELQSLSGIGRVKA
IELQAMIELGHRIHKHETLEMESILSSQKLAKKMQQELGDKKQEHLVALYLNTQNQIIHQQTIFIGSVTRSIAEPREILH
YAIKHMATSLILVHNHPSGAVAPSQNDDHVTKLVKEACELMGIVLLDHLIVSHSNYFSYREKTDLI

Nucleotide


Download         Length: 681 bp        

>NTDB_id=32823 SP670_RS06165 WP_000286929.1 1174536..1175216(-) (radC) [Streptococcus pneumoniae 670-6B]
ATGTACAGTATTTCATTCCAAGAAGATTCACTATTACCAAGAGAAAGGCTGGCCAAGGAAGGAGTTGAAGCGCTTAGTAA
CCAAGAGTTGCTAGCTATTTTACTCAGGACAGGAACACGTCAAGTTAGCGTTTTTGAAATTGCCCAAAAAGTCTTGAACA
ATCTTTCAAGCCTAACGGATTTGAAAAAAATGACCCTGCAGGAATTGCAGAGTTTGTCTGGTATTGGGCGTGTTAAGGCC
ATAGAATTACAAGCTATGATTGAACTGGGGCATCGTATTCACAAACACGAGACTCTTGAAATGGAAAGTATTCTCAGCAG
TCAAAAGTTGGCCAAGAAGATGCAGCAGGAATTAGGGGATAAAAAACAAGAGCACCTGGTGGCACTCTATCTCAATACTC
AAAATCAAATCATCCATCAGCAGACCATTTTTATCGGTTCTGTAACTCGTAGTATCGCTGAACCGCGAGAGATTCTTCAC
TATGCAATCAAGCATATGGCGACTTCTCTTATCTTGGTCCACAATCATCCTTCAGGAGCGGTAGCGCCTAGCCAAAATGA
TGATCATGTCACTAAACTTGTTAAAGAAGCCTGCGAACTGATGGGAATTGTTCTCTTGGACCATTTGATTGTCTCTCATT
CTAATTACTTTAGTTATCGTGAAAAGACAGATTTAATCTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(106-222)

UPF0758 N-terminal (UPF0758_N)

(13-81)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C1CE75

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Streptococcus pneumoniae TIGR4

99.558

100

0.996
  radC Streptococcus pneumoniae R6

99.115

100

0.991
  radC Streptococcus pneumoniae D39

99.115

100

0.991
  radC Streptococcus gordonii str. Challis substr. CH1

76.106

100

0.761
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

48.095

92.92

0.447

Multiple sequence alignment