Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GEOB_RS18905 Genome accession   NC_011979
Coordinates   4252557..4253003 (-) Length   148 a.a.
NCBI ID   WP_012648857.1    Uniprot ID   B9M7M5
Organism   Geotalea daltonii FRC-32     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4247557..4258003
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GEOB_RS19575 (Geob_3790) - 4247581..4249107 (-) 1527 WP_012648854.1 ATP-binding protein -
  GEOB_RS18895 (Geob_3791) - 4249097..4250563 (-) 1467 WP_012648855.1 ATPase domain-containing protein -
  GEOB_RS19580 (Geob_3792) - 4250905..4252362 (-) 1458 WP_012648856.1 HD-GYP domain-containing protein -
  GEOB_RS18905 (Geob_3793) ssb 4252557..4253003 (-) 447 WP_012648857.1 single-stranded DNA-binding protein Machinery gene
  GEOB_RS20750 - 4253298..4253375 (-) 78 WP_407638391.1 hypothetical protein -
  GEOB_RS18910 (Geob_3794) - 4253751..4254641 (+) 891 WP_012648858.1 hypothetical protein -
  GEOB_RS18915 (Geob_3795) - 4254843..4256225 (-) 1383 WP_012648859.1 hypothetical protein -
  GEOB_RS18920 (Geob_3797) - 4256638..4257108 (+) 471 WP_012648860.1 hypothetical protein -
  GEOB_RS18925 (Geob_3798) - 4257278..4257976 (+) 699 WP_012648861.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 16281.12 Da        Isoelectric Point: 5.0428

>NTDB_id=32810 GEOB_RS18905 WP_012648857.1 4252557..4253003(-) (ssb) [Geotalea daltonii FRC-32]
MASLNKVMLIGNLGKDPEVRYTAAGTAVASFSLATTDRFKSKSGEWEEKTEWHNITLWSRLAEIAGEYLSKGKTVYIEGR
LQTRKWQDRDGKDRYTTEIVGEKMQMLSGKGEGGGGRQGGGGRQAPADDFGGPAYEEPVFNPDDDIPF

Nucleotide


Download         Length: 447 bp        

>NTDB_id=32810 GEOB_RS18905 WP_012648857.1 4252557..4253003(-) (ssb) [Geotalea daltonii FRC-32]
ATGGCCAGTTTGAACAAAGTTATGCTCATTGGAAACCTGGGCAAAGATCCCGAGGTGCGCTACACCGCTGCCGGTACTGC
CGTGGCCAGTTTCTCCCTCGCTACCACCGATCGGTTCAAGAGCAAGAGTGGAGAATGGGAAGAAAAGACCGAATGGCACA
ACATCACCCTATGGAGCCGGTTGGCTGAAATTGCCGGCGAATACCTCTCCAAGGGAAAAACCGTTTACATCGAGGGCAGG
CTGCAGACGAGAAAATGGCAGGACCGGGACGGCAAGGACCGCTACACCACCGAGATCGTCGGCGAAAAGATGCAGATGCT
CTCCGGCAAGGGCGAGGGGGGCGGGGGGCGCCAGGGAGGCGGCGGCAGGCAGGCTCCTGCCGATGACTTCGGCGGGCCTG
CATATGAAGAGCCGGTTTTCAACCCGGATGATGATATTCCTTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B9M7M5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

49.718

100

0.595
  ssb Glaesserella parasuis strain SC1401

46.667

100

0.568
  ssb Neisseria gonorrhoeae MS11

45.087

100

0.527
  ssb Neisseria meningitidis MC58

44.509

100

0.52

Multiple sequence alignment