Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilI   Type   Machinery gene
Locus tag   EGH11_RS02730 Genome accession   NZ_CP034018
Coordinates   449501..450115 (+) Length   204 a.a.
NCBI ID   WP_012503479.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain FQ82     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 444501..455115
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGH11_RS02695 (EGH11_02695) - 444998..445330 (+) 333 WP_003687908.1 hypothetical protein -
  EGH11_RS02700 (EGH11_02700) - 445661..446170 (+) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  EGH11_RS02710 (EGH11_02710) - 446402..446983 (-) 582 WP_003690895.1 superoxide dismutase -
  EGH11_RS02720 (EGH11_02720) dnaB 447147..448550 (+) 1404 WP_012503477.1 replicative DNA helicase -
  EGH11_RS02725 (EGH11_02725) pilH 448807..449469 (+) 663 WP_041421240.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  EGH11_RS02730 (EGH11_02730) pilI 449501..450115 (+) 615 WP_012503479.1 type IV pilus modification protein PilV Machinery gene
  EGH11_RS02735 (EGH11_02735) pilJ 450112..451071 (+) 960 WP_071198137.1 PilW family protein Machinery gene
  EGH11_RS02740 (EGH11_02740) pilK 451050..451658 (+) 609 WP_047926669.1 pilus assembly protein Machinery gene
  EGH11_RS02745 (EGH11_02745) pilL 451660..452130 (+) 471 WP_169577278.1 PilX family type IV pilin Machinery gene
  EGH11_RS02750 (EGH11_02750) - 452200..452508 (-) 309 WP_010951048.1 AzlD family protein -
  EGH11_RS02755 (EGH11_02755) - 452505..453214 (-) 710 Protein_455 AzlC family ABC transporter permease -
  EGH11_RS02760 (EGH11_02760) dut 453380..453832 (+) 453 WP_003690909.1 dUTP diphosphatase -
  EGH11_RS02765 (EGH11_02765) dapC 453910..455097 (+) 1188 WP_003701073.1 succinyldiaminopimelate transaminase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22099.99 Da        Isoelectric Point: 4.9673

>NTDB_id=328087 EGH11_RS02730 WP_012503479.1 449501..450115(+) (pilI) [Neisseria gonorrhoeae strain FQ82]
MKNNDCLRLKNPQSGMALIEVLVAMLVLTIGILALLSVQLRTVASVREAETQTIVSQITQNLMEGMLMNPTIDSDSNKKN
YNLYTGPYTPTPSGGDFKLNNNNLISKKDLAKAQLDRFDYELRNALPDAVAIHYAVCKDSSGGAPTLSGGTFSPNCDNKA
NGDTLIKVLWVNDSAGDSDISRTNLEVSGDNIVYTYQARVGGHE

Nucleotide


Download         Length: 615 bp        

>NTDB_id=328087 EGH11_RS02730 WP_012503479.1 449501..450115(+) (pilI) [Neisseria gonorrhoeae strain FQ82]
ATGAAGAATAATGATTGCTTGCGCCTGAAAAATCCCCAGTCCGGTATGGCGTTGATAGAAGTCTTGGTCGCTATGCTCGT
TCTGACCATCGGTATTTTGGCATTGCTGTCCGTACAGTTGCGGACGGTCGCTTCCGTCAGGGAGGCGGAGACACAAACCA
TCGTCAGCCAAATCACGCAAAACCTGATGGAAGGAATGTTGATGAATCCGACCATTGATTCGGACAGCAACAAGAAAAAC
TATAATCTTTACACGGGGCCGTACACCCCCACTCCCTCTGGCGGCGATTTCAAGCTTAATAATAATAATTTGATAAGTAA
GAAGGATTTGGCAAAAGCCCAGTTGGACAGGTTCGATTATGAATTGAGAAACGCCTTGCCGGATGCGGTAGCTATTCATT
ACGCCGTCTGCAAGGATTCGTCGGGTGGCGCGCCGACATTGTCCGGCGGTACTTTTTCTCCAAATTGCGATAATAAGGCA
AACGGGGATACTTTGATTAAAGTATTGTGGGTAAATGATTCGGCAGGGGATTCGGATATTTCCCGTACGAATCTTGAGGT
GAGCGGCGACAATATCGTATATACCTATCAGGCAAGGGTCGGAGGTCATGAATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilI Neisseria gonorrhoeae MS11

90.686

100

0.907
  pilV Neisseria gonorrhoeae MS11

90.686

100

0.907
  pilV Neisseria meningitidis 8013

84.135

100

0.858

Multiple sequence alignment