Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   FGF55_RS14685 Genome accession   NZ_CP041691
Coordinates   2979089..2979784 (-) Length   231 a.a.
NCBI ID   WP_014418686.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain ZJU1     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2974089..2984784
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGF55_RS14665 (FGF55_14665) - 2974471..2975190 (-) 720 WP_014418682.1 TIGR02206 family membrane protein -
  FGF55_RS14670 (FGF55_14670) - 2975297..2977237 (-) 1941 WP_014418683.1 ABC transporter permease -
  FGF55_RS14675 (FGF55_14675) - 2977234..2977989 (-) 756 WP_032863527.1 ABC transporter ATP-binding protein -
  FGF55_RS14680 (FGF55_14680) - 2978092..2979096 (-) 1005 WP_014721692.1 sensor histidine kinase -
  FGF55_RS14685 (FGF55_14685) braR 2979089..2979784 (-) 696 WP_014418686.1 response regulator transcription factor Regulator
  FGF55_RS14690 (FGF55_14690) - 2979848..2981158 (-) 1311 WP_014418687.1 FtsX-like permease family protein -
  FGF55_RS14695 (FGF55_14695) - 2981148..2981843 (-) 696 WP_007408816.1 ABC transporter ATP-binding protein -
  FGF55_RS14700 (FGF55_14700) - 2981859..2982839 (-) 981 WP_014418688.1 hypothetical protein -
  FGF55_RS14705 (FGF55_14705) - 2982876..2983862 (-) 987 WP_014418689.1 ABC transporter permease -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 26839.08 Da        Isoelectric Point: 7.1196

>NTDB_id=328089 FGF55_RS14685 WP_014418686.1 2979089..2979784(-) (braR) [Bacillus amyloliquefaciens strain ZJU1]
MFHILLIEDDNTLFHEMKERLTGWSFAVHGIKDFSRVIREFSEIKPDLVIIDVQLPKFDGFHWCRMIRSQSNVPILFLSS
RDHPADMVMSMQLGADDFIQKPFHFDVLIAKIQAVFRRVHQYGTEPALMKRWCGAVIDTETNTVSRKNGSVELTKNEMLI
LKLLAEQKNKIVSREELIRSLWNDERFVSDNTLTVNVNRLRKKLDQLGIGKMIETKVGQGYIAKEEDGLYD

Nucleotide


Download         Length: 696 bp        

>NTDB_id=328089 FGF55_RS14685 WP_014418686.1 2979089..2979784(-) (braR) [Bacillus amyloliquefaciens strain ZJU1]
ATGTTTCACATTTTGTTAATAGAAGATGATAACACTTTGTTTCACGAGATGAAAGAGAGATTAACGGGCTGGTCATTTGC
GGTGCACGGAATAAAAGATTTCAGCCGGGTCATCCGGGAGTTTTCCGAAATTAAGCCTGATTTGGTGATCATTGATGTAC
AGCTGCCGAAATTTGACGGCTTTCATTGGTGCAGAATGATACGCTCCCAATCAAACGTGCCGATTCTCTTTTTGTCCTCG
CGCGATCATCCCGCGGATATGGTCATGTCGATGCAGCTCGGGGCAGATGATTTTATTCAGAAGCCTTTTCACTTTGATGT
GTTAATCGCGAAAATACAGGCGGTGTTCCGCCGTGTGCATCAATACGGCACAGAACCGGCGCTGATGAAAAGATGGTGCG
GGGCGGTCATTGACACAGAAACCAACACGGTCAGCCGTAAAAACGGTTCGGTCGAGCTGACCAAAAACGAAATGCTGATC
TTAAAACTGCTGGCTGAGCAGAAAAATAAAATCGTCAGCCGGGAAGAACTCATCAGAAGCCTATGGAATGATGAGCGTTT
CGTCAGTGATAATACGCTGACGGTGAATGTCAACCGGCTGCGGAAAAAACTCGATCAATTAGGCATCGGGAAAATGATTG
AAACCAAGGTGGGGCAGGGATACATCGCAAAGGAAGAAGACGGTCTTTATGATTAA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(150-222)

Response regulator receiver domain (Response_reg)

(4-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

40.639

94.805

0.385

Multiple sequence alignment