Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsS   Type   Regulator
Locus tag   VV7356_RS10575 Genome accession   NZ_CP041683
Coordinates   2334295..2334654 (+) Length   119 a.a.
NCBI ID   WP_011082062.1    Uniprot ID   A0A3Q0KZY8
Organism   Vibrio vulnificus strain 7356     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 2329295..2339654
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VV7356_RS10555 (VV7356_10630) - 2329350..2330567 (+) 1218 WP_011082066.1 AAA family ATPase -
  VV7356_RS10560 (VV7356_10635) - 2330575..2331549 (+) 975 WP_017419904.1 ParB/RepB/Spo0J family partition protein -
  VV7356_RS10565 (VV7356_10640) - 2331648..2333675 (+) 2028 WP_017791380.1 tRNA(Met) cytidine acetyltransferase TmcA -
  VV7356_RS10570 (VV7356_10645) - 2334009..2334263 (+) 255 WP_017791379.1 STAS domain-containing protein -
  VV7356_RS10575 (VV7356_10650) cqsS 2334295..2334654 (+) 360 WP_011082062.1 response regulator Regulator
  VV7356_RS10580 (VV7356_10655) - 2334689..2336803 (+) 2115 WP_017791397.1 chemotaxis protein CheA -
  VV7356_RS10585 (VV7356_10660) - 2336813..2337319 (+) 507 WP_017791378.1 chemotaxis protein CheW -
  VV7356_RS10590 (VV7356_10665) - 2337319..2337780 (+) 462 WP_026050241.1 chemotaxis protein CheW -

Sequence

Protein


Download         Length: 119 a.a.        Molecular weight: 13132.34 Da        Isoelectric Point: 9.5159

>NTDB_id=327922 VV7356_RS10575 WP_011082062.1 2334295..2334654(+) (cqsS) [Vibrio vulnificus strain 7356]
MVKILAVDDSVSIRQMVSHTLKDAGYDVETANDGSDALQKSKTTKFDVVISDVNMPNMGGFELVRAMRAIPQYKFIPILM
LTTETSPEKKMEGKSAGATGWLVKPFNPDTLLKTLKRVL

Nucleotide


Download         Length: 360 bp        

>NTDB_id=327922 VV7356_RS10575 WP_011082062.1 2334295..2334654(+) (cqsS) [Vibrio vulnificus strain 7356]
ATGGTTAAGATTCTCGCAGTGGACGATTCTGTCTCTATTCGTCAAATGGTCAGTCACACATTAAAAGATGCTGGATACGA
TGTTGAAACCGCCAATGATGGCAGTGACGCATTACAAAAATCCAAAACCACCAAATTCGATGTGGTGATTTCCGACGTTA
ACATGCCTAACATGGGCGGCTTTGAATTAGTGCGCGCCATGCGGGCGATACCGCAATACAAGTTTATTCCCATTCTGATG
TTGACCACCGAAACCAGCCCCGAAAAAAAGATGGAAGGAAAATCCGCAGGGGCGACTGGTTGGTTAGTGAAGCCTTTTAA
TCCCGATACTTTGCTCAAAACACTAAAACGCGTGCTTTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3Q0KZY8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsS Vibrio cholerae strain A1552

39.64

93.277

0.37
  pilH Synechocystis sp. PCC 6803

36.975

100

0.37
  pilL-C Synechocystis sp. PCC 6803

37.607

98.319

0.37
  scnR Streptococcus mutans UA159

35.833

100

0.361

Multiple sequence alignment