Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   FNV58_RS37950 Genome accession   NZ_CP041654
Coordinates   8105539..8107164 (+) Length   541 a.a.
NCBI ID   WP_097286411.1    Uniprot ID   A0ABU3UJU4
Organism   Streptomyces sp. RLB1-9     
Function   promote branch migration; interact with DprA; integration of tDNA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 8100539..8112164
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FNV58_RS37915 (FNV58_38445) lepB 8100678..8101394 (+) 717 WP_054235358.1 signal peptidase I -
  FNV58_RS37920 (FNV58_38450) lepB 8101387..8102469 (+) 1083 WP_054235357.1 signal peptidase I -
  FNV58_RS37925 (FNV58_38455) lepB 8102354..8103304 (+) 951 WP_097286409.1 signal peptidase I -
  FNV58_RS37930 (FNV58_38460) lepB 8103386..8104129 (+) 744 WP_097286410.1 signal peptidase I -
  FNV58_RS37935 (FNV58_38465) - 8104119..8104646 (+) 528 WP_143628258.1 NUDIX hydrolase -
  FNV58_RS37940 (FNV58_38470) - 8104702..8105010 (+) 309 WP_003965949.1 DUF2469 domain-containing protein -
  FNV58_RS37945 (FNV58_38475) - 8105168..8105539 (+) 372 WP_095852379.1 YraN family protein -
  FNV58_RS37950 (FNV58_38480) comM 8105539..8107164 (+) 1626 WP_097286411.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  FNV58_RS37955 (FNV58_38485) dprA 8107161..8108309 (+) 1149 WP_143628260.1 DNA-processing protein DprA -
  FNV58_RS37960 (FNV58_38490) whiG 8108582..8109424 (+) 843 WP_054235351.1 RNA polymerase sigma factor WhiG -
  FNV58_RS37965 (FNV58_38495) - 8109568..8110125 (+) 558 WP_054235350.1 TetR/AcrR family transcriptional regulator -
  FNV58_RS37970 (FNV58_38500) - 8110453..8111076 (-) 624 WP_143628262.1 M23 family metallopeptidase -

Sequence

Protein


Download         Length: 541 a.a.        Molecular weight: 56581.92 Da        Isoelectric Point: 6.6867

>NTDB_id=327773 FNV58_RS37950 WP_097286411.1 8105539..8107164(+) (comM) [Streptomyces sp. RLB1-9]
MGFARTCAVALVGVEGVVVEVQADLEPGVAAFTLVGLPDKSLTESKDRVRAAVVNSGSAWPQKKLTVGLSPASVPKGGSG
FDLAVACAVLGAAERIDPRVLSDIVMIGELGLDGRVRPVRGVLPAVLAAADAGYEQVVVPECAAAEASLVPGISVLGVRS
LRQLIAVLTDEPVPEEDPDEQGRPDPLMAGLRMPGTGAATGMHGMGAAQHDHGHDLADVVGQHSARTAVEVAAAGGHHLF
LEGPPGAGKTMLAERLPAVLPRLTKGESLEVTAVHSVAGLLPPGKPLVDIAPYCAPHHSATMQALVGGGQGIARPGAVSL
AHRGVLFLDETPEFSSQALDALRQPLEAGHVVIARSAGVVRFPARFLMVLAANPCPCGRFSQRDDLCECPPSMIRRYQAR
LSGPLLDRVDLRVEVDRVTRSELTERGARGESTETVADRVRAARERAAVRLAGTPWRTNSEVPGRELRSRWYASLGAMDE
AERSLERGALTARGLDRVLRVAWTVADLVGHDRPGATDVALALQLRTGVPRGVPMAIGALS

Nucleotide


Download         Length: 1626 bp        

>NTDB_id=327773 FNV58_RS37950 WP_097286411.1 8105539..8107164(+) (comM) [Streptomyces sp. RLB1-9]
ATGGGATTCGCGCGTACCTGTGCGGTGGCCCTCGTGGGCGTCGAGGGCGTGGTCGTCGAGGTCCAGGCGGACCTGGAGCC
GGGCGTCGCGGCCTTCACCCTGGTCGGCCTGCCCGACAAGAGCCTGACCGAGAGCAAGGACCGGGTCCGGGCGGCGGTGG
TGAACTCCGGCTCGGCGTGGCCCCAGAAGAAGCTCACGGTCGGCCTGAGCCCGGCATCCGTACCCAAGGGCGGCAGCGGC
TTCGACCTGGCCGTCGCCTGCGCGGTGCTGGGAGCCGCCGAGCGCATCGATCCCCGGGTGCTCTCCGACATCGTGATGAT
CGGCGAACTGGGCCTGGACGGACGTGTGCGGCCGGTGCGGGGCGTGCTGCCGGCGGTCCTGGCCGCAGCCGACGCCGGGT
ACGAGCAGGTGGTGGTGCCCGAGTGCGCGGCCGCCGAGGCCTCGCTCGTACCGGGGATCTCGGTGCTCGGGGTGCGCAGT
CTGCGCCAGCTGATCGCGGTGCTCACGGACGAGCCGGTGCCCGAGGAGGATCCGGACGAGCAGGGGCGACCGGATCCGCT
GATGGCGGGACTGCGGATGCCGGGCACGGGCGCCGCCACCGGCATGCACGGCATGGGCGCGGCCCAGCACGACCACGGTC
ACGACCTCGCCGACGTCGTGGGCCAGCACTCGGCACGGACCGCCGTGGAGGTCGCGGCGGCGGGCGGTCACCACCTCTTC
CTGGAGGGTCCCCCGGGAGCGGGCAAGACGATGCTCGCCGAGCGGCTGCCGGCCGTCCTGCCGCGGCTCACCAAGGGCGA
ATCCCTGGAGGTCACCGCCGTCCACTCGGTCGCCGGCCTGCTGCCACCGGGCAAACCCCTGGTCGACATCGCTCCCTACT
GCGCCCCGCACCACTCGGCGACCATGCAGGCCCTCGTCGGCGGCGGCCAGGGAATCGCACGGCCGGGCGCGGTGTCCCTG
GCGCACCGCGGGGTGCTCTTTCTGGACGAAACGCCCGAATTTAGCAGCCAGGCCCTCGACGCGCTGCGCCAGCCCCTGGA
GGCGGGGCATGTGGTGATCGCGCGCAGTGCGGGGGTGGTGCGGTTTCCGGCGCGGTTCCTGATGGTGCTGGCGGCGAACC
CCTGTCCCTGCGGCCGTTTCTCGCAGCGGGACGACCTGTGCGAGTGCCCGCCCTCCATGATCCGCCGCTACCAGGCCAGG
CTCTCCGGGCCGCTGCTCGACCGCGTCGACCTGCGGGTCGAGGTGGACCGCGTCACCCGGTCCGAGCTGACCGAGCGAGG
TGCGCGGGGCGAATCCACCGAGACGGTCGCCGACCGGGTGCGGGCGGCCAGGGAGCGGGCCGCCGTGCGGCTGGCGGGCA
CGCCCTGGCGGACGAACAGCGAAGTGCCGGGCCGGGAGCTGCGCAGCCGCTGGTACGCGTCCCTGGGCGCGATGGACGAG
GCGGAGCGGAGCCTTGAGCGAGGTGCCCTGACCGCCCGGGGCCTCGACCGGGTGCTGCGTGTCGCCTGGACCGTCGCGGA
CCTGGTGGGACACGACCGACCCGGCGCGACGGACGTCGCCCTCGCCCTGCAACTGCGCACCGGGGTCCCCCGTGGGGTAC
CGATGGCGATCGGCGCGCTGTCGTGA

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-141)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(430-526)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(215-422)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae O1 biovar El Tor strain E7946

39.773

97.597

0.388
  comM Vibrio cholerae strain A1552

39.773

97.597

0.388
  comM Vibrio campbellii strain DS40M4

39.212

98.521

0.386
  comM Acinetobacter baylyi ADP1

39.766

94.824

0.377
  comM Haemophilus influenzae Rd KW20

37.64

98.706

0.372
  comM Glaesserella parasuis strain SC1401

36.981

97.967

0.362