Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RSKD131_RS00470 Genome accession   NC_011963
Coordinates   89508..90029 (-) Length   173 a.a.
NCBI ID   WP_009563714.1    Uniprot ID   -
Organism   Cereibacter sphaeroides KD131     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 84508..95029
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RSKD131_RS00455 (RSKD131_0092) - 86327..86653 (-) 327 WP_012643474.1 YnfA family protein -
  RSKD131_RS00460 (RSKD131_0093) - 86653..87078 (-) 426 WP_009563712.1 helix-turn-helix domain-containing protein -
  RSKD131_RS00465 (RSKD131_0094) - 87162..89384 (+) 2223 WP_041669063.1 heavy metal translocating P-type ATPase -
  RSKD131_RS00470 (RSKD131_0095) ssb 89508..90029 (-) 522 WP_009563714.1 single-stranded DNA-binding protein Machinery gene
  RSKD131_RS00475 (RSKD131_0096) - 90243..90857 (+) 615 WP_041669982.1 lytic transglycosylase domain-containing protein -
  RSKD131_RS00480 (RSKD131_0097) serS 90970..92262 (-) 1293 WP_012643477.1 serine--tRNA ligase -
  RSKD131_RS00485 (RSKD131_0098) - 92369..92926 (-) 558 WP_012643478.1 superoxide dismutase family protein -
  RSKD131_RS00490 (RSKD131_0100) yajC 93218..93544 (+) 327 WP_002722646.1 preprotein translocase subunit YajC -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18631.35 Da        Isoelectric Point: 5.9820

>NTDB_id=32777 RSKD131_RS00470 WP_009563714.1 89508..90029(-) (ssb) [Cereibacter sphaeroides KD131]
MAGSVNKVIIIGNLGRDPEVRSFQNGGKVVNLRIATSEQWRDRASGERKERTEWHSVAIFDENLARVAEQYLRKGSTVYI
EGQLETRKWQDQSGQDRYSTEVVLRPFRSSLTMLGGRGEGAGAGGGMGGGGYEDRGGPDSYDNYGSSPRGGASSGGAPSG
GGRRNDLDDEIPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=32777 RSKD131_RS00470 WP_009563714.1 89508..90029(-) (ssb) [Cereibacter sphaeroides KD131]
ATGGCGGGCTCGGTCAACAAGGTCATCATCATCGGCAATCTCGGCCGCGATCCCGAGGTGCGCAGCTTCCAGAACGGCGG
CAAGGTGGTGAACCTCCGCATCGCCACGTCCGAGCAGTGGCGCGACCGCGCCTCGGGCGAGCGGAAGGAGCGCACCGAAT
GGCACTCGGTCGCCATCTTCGACGAGAACCTGGCGCGGGTGGCCGAGCAGTATCTGCGCAAGGGCTCGACCGTCTATATC
GAGGGCCAGCTCGAGACGCGGAAGTGGCAGGACCAGTCGGGTCAGGACCGCTACTCGACCGAGGTCGTGCTGCGCCCGTT
CCGCAGCTCGCTGACGATGCTCGGAGGGCGCGGCGAAGGCGCGGGCGCCGGCGGCGGCATGGGTGGCGGCGGCTACGAGG
ATCGCGGCGGGCCGGACAGCTACGACAATTACGGCAGCAGCCCCCGCGGCGGCGCCTCCTCGGGCGGCGCCCCGAGCGGC
GGCGGCCGCCGGAACGATCTCGACGACGAGATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

52.601

100

0.526
  ssb Glaesserella parasuis strain SC1401

45.699

100

0.491
  ssb Neisseria meningitidis MC58

40.556

100

0.422
  ssb Neisseria gonorrhoeae MS11

40.556

100

0.422

Multiple sequence alignment