Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   FNV59_RS37655 Genome accession   NZ_CP041650
Coordinates   8330761..8332386 (+) Length   541 a.a.
NCBI ID   WP_143603051.1    Uniprot ID   -
Organism   Streptomyces sp. RLB1-8     
Function   promote branch migration; interact with DprA; integration of tDNA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 8325761..8337386
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FNV59_RS37620 (FNV59_38185) lepB 8325900..8326616 (+) 717 WP_054235358.1 signal peptidase I -
  FNV59_RS37625 (FNV59_38190) lepB 8326609..8327691 (+) 1083 WP_054235357.1 signal peptidase I -
  FNV59_RS37630 (FNV59_38195) lepB 8327576..8328526 (+) 951 WP_097286409.1 signal peptidase I -
  FNV59_RS37635 (FNV59_38200) lepB 8328608..8329351 (+) 744 WP_097286410.1 signal peptidase I -
  FNV59_RS37640 (FNV59_38205) - 8329341..8329868 (+) 528 WP_054235440.1 NUDIX hydrolase -
  FNV59_RS37645 (FNV59_38210) - 8329924..8330232 (+) 309 WP_003965949.1 DUF2469 domain-containing protein -
  FNV59_RS37650 (FNV59_38215) - 8330390..8330761 (+) 372 WP_095852379.1 YraN family protein -
  FNV59_RS37655 (FNV59_38220) comM 8330761..8332386 (+) 1626 WP_143603051.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  FNV59_RS37660 (FNV59_38225) dprA 8332383..8333531 (+) 1149 WP_097286412.1 DNA-processing protein DprA -
  FNV59_RS37665 (FNV59_38230) whiG 8333804..8334646 (+) 843 WP_054235351.1 RNA polymerase sigma factor WhiG -
  FNV59_RS37670 (FNV59_38235) - 8334790..8335347 (+) 558 WP_143605662.1 TetR/AcrR family transcriptional regulator -
  FNV59_RS37675 (FNV59_38240) - 8335675..8336280 (-) 606 WP_240362380.1 M23 family metallopeptidase -

Sequence

Protein


Download         Length: 541 a.a.        Molecular weight: 56605.97 Da        Isoelectric Point: 6.8155

>NTDB_id=327677 FNV59_RS37655 WP_143603051.1 8330761..8332386(+) (comM) [Streptomyces sp. RLB1-8]
MGFARTCAVALVGVEGVVVEVQADLEPGVAAFTLVGLPDKSLTESKDRVRAAVVNSGSAWPQKKLTVGLSPASVPKGGSG
FDLAVACAVLGAAERIDPRVLSDIVMIGELGLDGRVRPVRGVLPAVLAAADAGYEQVVVPECAAAEASLVPGISVLGVRS
LRQLIAVLTDEPVPEEDPDEQGRPDPLMAGLRMPGTGAATGMHGMGAAQHDHGHDLADVVGQHSARTAVEVAAAGGHHLF
LEGPPGAGKTMLAERLPAVLPRLTKGESLEVTAVHSVAGLLPPGKPLVDIAPYCAPHHSATMQALVGGGQGIARPGAVSL
AHRGVLFLDETPEFSSRALDALRQPLEAGHVVIARSAGVVRFPARFLMVLAANPCPCGRFSQRDDLCECPPSVIRRYQAR
LSGPLLDRVDLRVEVDRVTRSELTERGARGESTETVADRVRAARERAAVRLAGTPWRTNSEVPGRELRSRWYASLGAMDE
AERSLERGALTARGLDRVLRVAWTVADLVGHDRPGATDVALALQLRTGVPRGVPMAIGVLS

Nucleotide


Download         Length: 1626 bp        

>NTDB_id=327677 FNV59_RS37655 WP_143603051.1 8330761..8332386(+) (comM) [Streptomyces sp. RLB1-8]
ATGGGATTCGCGCGTACCTGTGCGGTGGCCCTCGTGGGCGTCGAGGGCGTGGTCGTCGAGGTCCAGGCGGACCTGGAGCC
GGGCGTCGCGGCCTTCACCCTGGTCGGCCTGCCCGACAAGAGCCTGACCGAGAGCAAGGACCGGGTCCGGGCGGCGGTGG
TGAACTCCGGCTCGGCGTGGCCCCAGAAGAAGCTCACGGTCGGCCTGAGCCCGGCATCCGTACCCAAGGGCGGCAGCGGC
TTCGACCTGGCCGTCGCCTGCGCGGTGCTGGGAGCCGCCGAGCGCATCGATCCCCGGGTGCTCTCCGACATCGTGATGAT
CGGCGAACTGGGCCTGGACGGACGTGTGCGGCCGGTGCGGGGCGTGCTGCCGGCGGTCCTGGCCGCAGCCGACGCCGGGT
ACGAGCAGGTGGTGGTGCCCGAGTGCGCGGCCGCCGAGGCCTCGCTCGTACCGGGGATCTCGGTGCTCGGGGTGCGCAGT
CTGCGCCAGCTGATCGCGGTGCTCACGGACGAGCCGGTGCCCGAGGAGGATCCGGACGAGCAGGGGCGACCGGATCCGCT
GATGGCGGGACTGCGGATGCCGGGCACGGGCGCCGCCACCGGCATGCACGGCATGGGCGCGGCCCAGCACGACCACGGTC
ACGACCTCGCCGACGTCGTGGGCCAGCACTCGGCACGGACCGCCGTGGAGGTCGCGGCGGCGGGCGGTCACCACCTCTTC
CTGGAGGGTCCCCCGGGAGCGGGCAAGACGATGCTCGCCGAGCGGCTGCCGGCCGTCCTGCCGCGGCTCACCAAGGGCGA
ATCCCTGGAGGTCACCGCCGTCCACTCGGTCGCCGGCCTGCTGCCACCGGGCAAACCCCTGGTCGACATCGCTCCCTACT
GCGCCCCGCACCACTCGGCGACCATGCAGGCCCTCGTCGGCGGCGGCCAGGGAATCGCACGGCCGGGCGCGGTGTCCCTG
GCTCACCGCGGGGTGCTCTTTCTGGACGAAACGCCCGAATTCAGCAGCCGGGCCCTCGACGCGCTGCGCCAGCCCCTGGA
GGCGGGGCATGTGGTGATCGCGCGCAGTGCGGGGGTGGTGCGGTTTCCGGCGCGGTTCCTGATGGTGCTGGCAGCGAACC
CCTGTCCCTGCGGCCGTTTCTCGCAGCGGGACGACCTGTGCGAGTGCCCGCCCTCCGTGATCCGCCGCTACCAGGCCAGG
CTCTCCGGGCCGCTGCTCGACCGCGTCGACCTGCGGGTCGAGGTGGACCGTGTCACCCGGTCCGAGCTGACCGAGCGAGG
TGCGCGGGGCGAATCCACCGAGACGGTCGCCGACCGGGTGCGGGCGGCCAGGGAGCGGGCCGCCGTGCGGCTGGCGGGCA
CGCCCTGGCGGACGAACAGCGAAGTGCCGGGCCGGGAGCTGCGCAGCCGCTGGTACGCGTCCCTGGGCGCGATGGACGAG
GCGGAGCGGAGCCTTGAGCGAGGTGCCCTGACCGCCCGCGGCCTCGACCGGGTGCTGCGTGTCGCCTGGACCGTCGCGGA
CCTGGTGGGACACGACCGACCCGGCGCGACGGACGTCGCCCTCGCCCTGCAACTGCGCACCGGGGTCCCCCGTGGGGTAC
CGATGGCGATCGGCGTGCTGTCGTGA

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-141)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(215-422)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(430-526)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae O1 biovar El Tor strain E7946

39.773

97.597

0.388
  comM Vibrio cholerae strain A1552

39.773

97.597

0.388
  comM Vibrio campbellii strain DS40M4

39.212

98.521

0.386
  comM Acinetobacter baylyi ADP1

39.766

94.824

0.377
  comM Haemophilus influenzae Rd KW20

37.64

98.706

0.372
  comM Glaesserella parasuis strain SC1401

36.981

97.967

0.362

Multiple sequence alignment