Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   EFD77_RS02135 Genome accession   NZ_CP033982
Coordinates   435522..436025 (+) Length   167 a.a.
NCBI ID   WP_000934799.1    Uniprot ID   A0A7U7IE99
Organism   Staphylococcus aureus strain P2D8C1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 430522..441025
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EFD77_RS02105 (EFD77_02205) - 431462..432307 (+) 846 WP_001557587.1 ParB/RepB/Spo0J family partition protein -
  EFD77_RS02110 (EFD77_02210) - 432461..433342 (+) 882 WP_000373073.1 mechanosensitive ion channel family protein -
  EFD77_RS02115 (EFD77_02215) - 433372..433575 (+) 204 WP_000157348.1 DUF951 domain-containing protein -
  EFD77_RS02120 (EFD77_02220) ychF 433587..434684 (+) 1098 WP_001218732.1 redox-regulated ATPase YchF -
  EFD77_RS02125 (EFD77_02225) - 434770..434961 (-) 192 WP_001052484.1 hypothetical protein -
  EFD77_RS02130 (EFD77_02235) rpsF 435205..435501 (+) 297 WP_001261460.1 30S ribosomal protein S6 -
  EFD77_RS02135 (EFD77_02240) ssbA 435522..436025 (+) 504 WP_000934799.1 single-stranded DNA-binding protein Machinery gene
  EFD77_RS02140 (EFD77_02245) rpsR 436077..436319 (+) 243 WP_000897044.1 30S ribosomal protein S18 -
  EFD77_RS02145 (EFD77_02250) - 436558..437457 (-) 900 WP_001797289.1 Abi family protein -
  EFD77_RS02150 (EFD77_02255) - 437459..438673 (-) 1215 WP_000270134.1 tyrosine-type recombinase/integrase -
  EFD77_RS02155 (EFD77_02260) - 439129..439824 (-) 696 WP_000668212.1 helix-turn-helix domain-containing protein -
  EFD77_RS02160 (EFD77_02265) - 439968..440180 (+) 213 WP_000794656.1 helix-turn-helix domain-containing protein -
  EFD77_RS02165 (EFD77_02270) - 440181..440453 (+) 273 WP_000091734.1 helix-turn-helix domain-containing protein -
  EFD77_RS02170 (EFD77_02275) - 440465..440611 (+) 147 WP_031824147.1 hypothetical protein -
  EFD77_RS02175 (EFD77_02280) tscA 440604..440813 (+) 210 WP_001058486.1 type II toxin-antitoxin system antitoxin TscA -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18539.12 Da        Isoelectric Point: 4.7305

>NTDB_id=327577 EFD77_RS02135 WP_000934799.1 435522..436025(+) (ssbA) [Staphylococcus aureus strain P2D8C1]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=327577 EFD77_RS02135 WP_000934799.1 435522..436025(+) (ssbA) [Staphylococcus aureus strain P2D8C1]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

65.341

100

0.689
  ssb Latilactobacillus sakei subsp. sakei 23K

54.971

100

0.563
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

63.473

0.371
  ssb Glaesserella parasuis strain SC1401

34.463

100

0.365

Multiple sequence alignment