Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | EFD78_RS02135 | Genome accession | NZ_CP033977 |
| Coordinates | 435522..436025 (+) | Length | 167 a.a. |
| NCBI ID | WP_000934799.1 | Uniprot ID | A0A7U7IE99 |
| Organism | Staphylococcus aureus strain P2D15C1 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 435522..456974 | 435522..436025 | within | 0 |
Gene organization within MGE regions
Location: 435522..456974
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EFD78_RS02135 (EFD78_02240) | ssbA | 435522..436025 (+) | 504 | WP_000934799.1 | single-stranded DNA-binding protein | Machinery gene |
| EFD78_RS02140 (EFD78_02245) | rpsR | 436077..436319 (+) | 243 | WP_000897044.1 | 30S ribosomal protein S18 | - |
| EFD78_RS02145 (EFD78_02250) | - | 436558..437457 (-) | 900 | WP_001797289.1 | Abi family protein | - |
| EFD78_RS02150 (EFD78_02255) | - | 437459..438673 (-) | 1215 | WP_000270134.1 | tyrosine-type recombinase/integrase | - |
| EFD78_RS02155 (EFD78_02260) | - | 439129..439824 (-) | 696 | WP_000668212.1 | helix-turn-helix domain-containing protein | - |
| EFD78_RS02160 (EFD78_02265) | - | 439968..440180 (+) | 213 | WP_000794656.1 | helix-turn-helix domain-containing protein | - |
| EFD78_RS02165 (EFD78_02270) | - | 440181..440453 (+) | 273 | WP_000091734.1 | helix-turn-helix domain-containing protein | - |
| EFD78_RS02170 (EFD78_02275) | - | 440465..440611 (+) | 147 | WP_031824147.1 | hypothetical protein | - |
| EFD78_RS02175 (EFD78_02280) | tscA | 440604..440813 (+) | 210 | WP_001058486.1 | type II toxin-antitoxin system antitoxin TscA | - |
| EFD78_RS02180 (EFD78_02285) | tscT | 440816..441133 (+) | 318 | WP_001103938.1 | type II toxin-antitoxin system toxin TscT | - |
| EFD78_RS02185 (EFD78_02290) | - | 441185..442798 (+) | 1614 | WP_000344763.1 | hypothetical protein | - |
| EFD78_RS02190 (EFD78_02295) | - | 442969..443772 (+) | 804 | WP_000148371.1 | bifunctional DNA primase/polymerase | - |
| EFD78_RS02195 (EFD78_02300) | - | 443759..444031 (+) | 273 | WP_001149387.1 | hypothetical protein | - |
| EFD78_RS02200 (EFD78_02305) | - | 444033..444674 (+) | 642 | WP_001019289.1 | hypothetical protein | - |
| EFD78_RS02205 (EFD78_02310) | - | 445022..445363 (+) | 342 | WP_001190615.1 | hypothetical protein | - |
| EFD78_RS02210 (EFD78_02315) | - | 445375..445953 (+) | 579 | WP_156675458.1 | pathogenicity island protein | - |
| EFD78_RS02215 (EFD78_02320) | - | 445971..446189 (+) | 219 | WP_000448775.1 | capsid morphogenesis B protein | - |
| EFD78_RS02220 (EFD78_02325) | - | 446240..446767 (+) | 528 | WP_000771368.1 | spore coat protein | - |
| EFD78_RS02225 (EFD78_02330) | - | 446770..447111 (+) | 342 | WP_000358778.1 | hypothetical protein | - |
| EFD78_RS02230 (EFD78_02335) | - | 447108..447677 (+) | 570 | WP_001293073.1 | terminase small subunit | - |
| EFD78_RS02235 (EFD78_02340) | - | 448106..448624 (+) | 519 | WP_000624990.1 | hypothetical protein | - |
| EFD78_RS02240 (EFD78_02345) | - | 448621..449049 (+) | 429 | WP_000591858.1 | hypothetical protein | - |
| EFD78_RS02245 (EFD78_02350) | - | 449036..449815 (+) | 780 | WP_000705255.1 | hypothetical protein | - |
| EFD78_RS14660 | - | 450073..450204 (+) | 132 | WP_000247644.1 | hypothetical protein | - |
| EFD78_RS14550 | - | 450351..450449 (+) | 99 | Protein_409 | hypothetical protein | - |
| EFD78_RS02250 (EFD78_02355) | - | 450710..450862 (+) | 153 | WP_001788502.1 | hypothetical protein | - |
| EFD78_RS02255 (EFD78_02360) | - | 450933..451043 (+) | 111 | WP_000139423.1 | hypothetical protein | - |
| EFD78_RS02260 (EFD78_02365) | - | 451045..451230 (+) | 186 | WP_001286805.1 | hypothetical protein | - |
| EFD78_RS02265 (EFD78_02370) | - | 452026..452964 (-) | 939 | WP_001817700.1 | Abi family protein | - |
| EFD78_RS02270 (EFD78_02375) | - | 453003..453716 (-) | 714 | Protein_414 | tyrosine-type recombinase/integrase | - |
| EFD78_RS02275 (EFD78_02380) | selX | 453922..454533 (+) | 612 | WP_000475325.1 | staphylococcal enterotoxin-like toxin X | - |
| EFD78_RS02280 (EFD78_02385) | - | 454902..455270 (+) | 369 | WP_000849163.1 | YxeA family protein | - |
| EFD78_RS02285 (EFD78_02390) | - | 455451..456023 (+) | 573 | WP_000769722.1 | PepSY domain-containing protein | - |
| EFD78_RS02290 (EFD78_02395) | - | 456160..456423 (-) | 264 | WP_001055897.1 | helix-turn-helix domain-containing protein | - |
| EFD78_RS02295 (EFD78_02400) | - | 456723..456974 (+) | 252 | WP_000466748.1 | GlsB/YeaQ/YmgE family stress response membrane protein | - |
Sequence
Protein
Download Length: 167 a.a. Molecular weight: 18539.12 Da Isoelectric Point: 4.7305
>NTDB_id=327535 EFD78_RS02135 WP_000934799.1 435522..436025(+) (ssbA) [Staphylococcus aureus strain P2D15C1]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
Nucleotide
Download Length: 504 bp
>NTDB_id=327535 EFD78_RS02135 WP_000934799.1 435522..436025(+) (ssbA) [Staphylococcus aureus strain P2D15C1]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
65.341 |
100 |
0.689 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
54.971 |
100 |
0.563 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
63.473 |
0.371 |
| ssb | Glaesserella parasuis strain SC1401 |
34.463 |
100 |
0.365 |