Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | EHF44_RS03795 | Genome accession | NZ_CP033969 |
| Coordinates | 459668..460228 (-) | Length | 186 a.a. |
| NCBI ID | WP_124682517.1 | Uniprot ID | A0A3G8GWI8 |
| Organism | Cupriavidus pauculus strain FDAARGOS_614 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 454668..465228
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EHF44_RS03780 (EHF44_03780) | - | 455573..457207 (-) | 1635 | WP_124682514.1 | tyrosine-type recombinase/integrase | - |
| EHF44_RS03785 (EHF44_03785) | - | 457204..458400 (-) | 1197 | WP_124682515.1 | site-specific integrase | - |
| EHF44_RS03790 (EHF44_03790) | - | 458537..459004 (-) | 468 | WP_253699957.1 | toll/interleukin-1 receptor domain-containing protein | - |
| EHF44_RS28280 | - | 459187..459330 (+) | 144 | WP_172965990.1 | hypothetical protein | - |
| EHF44_RS03795 (EHF44_03795) | ssb | 459668..460228 (-) | 561 | WP_124682517.1 | single-stranded DNA-binding protein | Machinery gene |
| EHF44_RS03800 (EHF44_03800) | - | 460449..461699 (-) | 1251 | WP_124682518.1 | MFS transporter | - |
| EHF44_RS03805 (EHF44_03805) | - | 461671..462060 (-) | 390 | WP_124682519.1 | hypothetical protein | - |
| EHF44_RS03810 (EHF44_03810) | uvrA | 462098..464962 (+) | 2865 | WP_124682520.1 | excinuclease ABC subunit UvrA | - |
Sequence
Protein
Download Length: 186 a.a. Molecular weight: 19303.91 Da Isoelectric Point: 5.9517
>NTDB_id=327510 EHF44_RS03795 WP_124682517.1 459668..460228(-) (ssb) [Cupriavidus pauculus strain FDAARGOS_614]
MASVNKVILVGNLGADPETRYMPSGDAVTNIRLATTDRYKDKQSGEFKEATEWHRIAFFGKLAEIAGQYLRKGSSVYIEG
RIRTRKWQDQSGQDKYSTEIVADQMQMLGARQGGGGGGDEGGYGGGGGGGGGYSRESQGGSGGAGYGGGRGQGGGGAGGS
GGQQGGQRRQQQSSNGFEDMDDDIPF
MASVNKVILVGNLGADPETRYMPSGDAVTNIRLATTDRYKDKQSGEFKEATEWHRIAFFGKLAEIAGQYLRKGSSVYIEG
RIRTRKWQDQSGQDKYSTEIVADQMQMLGARQGGGGGGDEGGYGGGGGGGGGYSRESQGGSGGAGYGGGRGQGGGGAGGS
GGQQGGQRRQQQSSNGFEDMDDDIPF
Nucleotide
Download Length: 561 bp
>NTDB_id=327510 EHF44_RS03795 WP_124682517.1 459668..460228(-) (ssb) [Cupriavidus pauculus strain FDAARGOS_614]
ATGGCATCGGTCAACAAAGTCATCCTCGTCGGCAACCTGGGCGCCGACCCGGAAACCCGCTACATGCCCAGCGGCGACGC
CGTCACCAACATCCGGCTCGCGACGACCGACCGCTACAAGGACAAGCAGAGCGGCGAGTTCAAGGAAGCGACCGAGTGGC
ACCGCATCGCGTTCTTCGGCAAGCTGGCCGAGATCGCCGGCCAGTACCTGCGCAAGGGTTCGTCGGTCTACATCGAAGGC
CGCATCCGCACCCGCAAGTGGCAGGACCAGTCCGGCCAGGACAAGTACAGCACCGAAATCGTCGCCGACCAGATGCAGAT
GCTGGGCGCCCGCCAGGGCGGCGGTGGCGGCGGTGACGAGGGTGGCTACGGCGGCGGTGGCGGTGGTGGCGGCGGCTACA
GCCGCGAATCGCAAGGCGGCAGCGGTGGCGCCGGCTACGGCGGCGGCCGCGGCCAGGGCGGCGGCGGGGCTGGTGGCAGC
GGCGGCCAGCAGGGCGGCCAGCGTCGCCAGCAACAGTCGTCGAACGGCTTCGAGGATATGGACGACGATATTCCGTTCTA
A
ATGGCATCGGTCAACAAAGTCATCCTCGTCGGCAACCTGGGCGCCGACCCGGAAACCCGCTACATGCCCAGCGGCGACGC
CGTCACCAACATCCGGCTCGCGACGACCGACCGCTACAAGGACAAGCAGAGCGGCGAGTTCAAGGAAGCGACCGAGTGGC
ACCGCATCGCGTTCTTCGGCAAGCTGGCCGAGATCGCCGGCCAGTACCTGCGCAAGGGTTCGTCGGTCTACATCGAAGGC
CGCATCCGCACCCGCAAGTGGCAGGACCAGTCCGGCCAGGACAAGTACAGCACCGAAATCGTCGCCGACCAGATGCAGAT
GCTGGGCGCCCGCCAGGGCGGCGGTGGCGGCGGTGACGAGGGTGGCTACGGCGGCGGTGGCGGTGGTGGCGGCGGCTACA
GCCGCGAATCGCAAGGCGGCAGCGGTGGCGCCGGCTACGGCGGCGGCCGCGGCCAGGGCGGCGGCGGGGCTGGTGGCAGC
GGCGGCCAGCAGGGCGGCCAGCGTCGCCAGCAACAGTCGTCGAACGGCTTCGAGGATATGGACGACGATATTCCGTTCTA
A
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
50.521 |
100 |
0.522 |
| ssb | Glaesserella parasuis strain SC1401 |
48.663 |
100 |
0.489 |
| ssb | Neisseria meningitidis MC58 |
43.784 |
99.462 |
0.435 |
| ssb | Neisseria gonorrhoeae MS11 |
43.548 |
100 |
0.435 |