Detailed information NTG0327478

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: FNW97_RS15275
• Genome accession: NZ_CP041627
• Coordinates: 3028620..3029612 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain ETEC6
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3023620..3034612

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FNW97_RS15255 (FNW97_15255)	otnK	3024395..3025657 (+)	1263	WP_000590403.1	3-oxo-tetronate kinase	-
FNW97_RS15260 (FNW97_15260)	ygbL	3025654..3026292 (+)	639	WP_001278994.1	aldolase	-
FNW97_RS15265 (FNW97_15265)	ygbM	3026297..3027073 (+)	777	WP_001136934.1	HPr family phosphocarrier protein	-
FNW97_RS15270 (FNW97_15270)	ygbN	3027162..3028526 (+)	1365	WP_000104441.1	GntP family transporter	-
FNW97_RS15275 (FNW97_15275)	rpoS	3028620..3029612 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
FNW97_RS15280 (FNW97_15280)	nlpD	3029675..3030769 (-)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
FNW97_RS15285 (FNW97_15285)	pcm	3030954..3031580 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
FNW97_RS15290 (FNW97_15290)	surE	3031574..3032335 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
FNW97_RS15295 (FNW97_15295)	truD	3032316..3033365 (-)	1050	WP_000568946.1	tRNA pseudouridine(13) synthase TruD	-
FNW97_RS15300 (FNW97_15300)	ispF	3033362..3033841 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
FNW97_RS15305 (FNW97_15305)	ispD	3033841..3034551 (-)	711	WP_149796532.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=327478 FNW97_RS15275 WP_000081550.1 3028620..3029612(-) (rpoS) [Escherichia coli strain ETEC6]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=327478 FNW97_RS15275 WP_000081550.1 3028620..3029612(-) (rpoS) [Escherichia coli strain ETEC6]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715