Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   EG882_RS03480 Genome accession   NZ_CP033967
Coordinates   652039..652557 (+) Length   172 a.a.
NCBI ID   WP_004392979.1    Uniprot ID   A0A9Q3LJE1
Organism   Bacillus velezensis strain 1B-23     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 647039..657557
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EG882_RS03460 (EG882_03460) - 648117..648323 (+) 207 WP_012118942.1 DUF951 domain-containing protein -
  EG882_RS03465 (EG882_03465) - 648370..650373 (+) 2004 WP_043020838.1 molybdopterin-dependent oxidoreductase -
  EG882_RS03470 (EG882_03470) ychF 650500..651600 (+) 1101 WP_004392975.1 redox-regulated ATPase YchF -
  EG882_RS03475 (EG882_03475) rpsF 651712..651999 (+) 288 WP_004392977.1 30S ribosomal protein S6 -
  EG882_RS03480 (EG882_03480) ssbA 652039..652557 (+) 519 WP_004392979.1 single-stranded DNA-binding protein SsbA Machinery gene
  EG882_RS03485 (EG882_03485) rpsR 652601..652840 (+) 240 WP_004392983.1 30S ribosomal protein S18 -
  EG882_RS03490 (EG882_03490) - 653033..653614 (+) 582 WP_043020839.1 bifunctional transcriptional activator/DNA repair enzyme AdaA -
  EG882_RS03495 (EG882_03495) - 653611..654168 (+) 558 WP_063093688.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  EG882_RS03500 (EG882_03500) xth 654165..654923 (+) 759 WP_124692627.1 exodeoxyribonuclease III -
  EG882_RS03505 (EG882_03505) - 654986..655930 (+) 945 WP_124692628.1 LacI family DNA-binding transcriptional regulator -
  EG882_RS03510 (EG882_03510) - 655982..656362 (+) 381 WP_124692629.1 VOC family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18745.31 Da        Isoelectric Point: 4.7621

>NTDB_id=327444 EG882_RS03480 WP_004392979.1 652039..652557(+) (ssbA) [Bacillus velezensis strain 1B-23]
MLNRVVLVGRLTKDPELRYTPSGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNSGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=327444 EG882_RS03480 WP_004392979.1 652039..652557(+) (ssbA) [Bacillus velezensis strain 1B-23]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAGCGGTGCGGCTGTCGC
CACGTTTACTCTAGCTGTGAATCGTACATTCACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTTCTTAAAAAAGGAAGCCTTGCCGGCGTAGACGGCCGACTCCAGACAAGA
AATTATGAAAACCAGCAGGGACAGCGTGTCTTCGTGACAGAAGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCTAAAAA
CAGCGGCGGTTCTGGATCAGGCGGATACAACGAAGGAAACAGCGGCGGAGGCCAATACTTTGGCGGAGGCCAAAATGATA
ATCCGTTCGGCGGAAATCAGAATAACCAGAGACGAAATCAAGGGAACAGCTTTAATGATGATCCATTTGCCAACGACGGC
AAGCCGATTGACATCTCGGATGATGATCTTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

98.837

100

0.988
  ssb Latilactobacillus sakei subsp. sakei 23K

58.757

100

0.605
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378

Multiple sequence alignment